Experiment: Delta-Dodecalactone (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3638 and PP_3639 are separated by 99 nucleotides PP_3639 and PP_3640 are separated by 3 nucleotides PP_3640 and PP_3641 are separated by 69 nucleotides
PP_3638: PP_3638 - putative Acyl-CoA dehydrogenase, at 4,133,965 to 4,135,029
_3638
PP_3639: PP_3639 - Alkylhydroperoxidase AhpD domain protein, at 4,135,129 to 4,135,788
_3639
PP_3640: PP_3640 - Transcriptional regulator, AraC family, at 4,135,792 to 4,136,712
_3640
PP_3641: PP_3641 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 4,136,782 to 4,138,185
_3641
Position (kb) 4135
4136 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4134.370 kb on + strand, within PP_3638 at 4134.481 kb on + strand, within PP_3638 at 4134.481 kb on + strand, within PP_3638 at 4134.481 kb on + strand, within PP_3638 at 4134.482 kb on - strand, within PP_3638 at 4134.588 kb on + strand, within PP_3638 at 4134.589 kb on - strand, within PP_3638 at 4134.589 kb on - strand, within PP_3638 at 4134.785 kb on + strand, within PP_3638 at 4134.786 kb on - strand, within PP_3638 at 4134.949 kb on + strand at 4134.950 kb on - strand at 4135.093 kb on + strand at 4135.094 kb on - strand at 4135.094 kb on - strand at 4135.106 kb on + strand at 4135.106 kb on + strand at 4135.107 kb on - strand at 4135.107 kb on - strand at 4135.116 kb on + strand at 4135.116 kb on + strand at 4135.117 kb on - strand at 4135.117 kb on - strand at 4135.117 kb on - strand at 4135.131 kb on - strand at 4135.223 kb on - strand, within PP_3639 at 4135.284 kb on - strand, within PP_3639 at 4135.284 kb on - strand, within PP_3639 at 4135.548 kb on - strand, within PP_3639 at 4135.548 kb on - strand, within PP_3639 at 4135.548 kb on - strand, within PP_3639 at 4135.670 kb on - strand, within PP_3639 at 4135.670 kb on - strand, within PP_3639 at 4135.670 kb on - strand, within PP_3639 at 4135.670 kb on - strand, within PP_3639 at 4135.718 kb on - strand, within PP_3639 at 4135.718 kb on - strand, within PP_3639 at 4135.734 kb on - strand at 4135.734 kb on - strand at 4135.740 kb on + strand at 4135.740 kb on + strand at 4135.741 kb on - strand at 4135.789 kb on + strand at 4135.789 kb on + strand at 4135.789 kb on + strand at 4135.790 kb on - strand at 4135.790 kb on - strand at 4135.790 kb on - strand at 4135.790 kb on - strand at 4135.790 kb on - strand at 4135.790 kb on - strand at 4135.826 kb on + strand at 4135.826 kb on + strand at 4135.827 kb on - strand at 4135.827 kb on - strand at 4135.870 kb on + strand at 4135.871 kb on - strand at 4136.196 kb on - strand, within PP_3640 at 4136.320 kb on + strand, within PP_3640 at 4136.320 kb on + strand, within PP_3640 at 4136.321 kb on - strand, within PP_3640 at 4136.597 kb on + strand, within PP_3640 at 4136.597 kb on + strand, within PP_3640 at 4136.615 kb on - strand, within PP_3640
Per-strain Table
Position Strand Gene LocusTag Fraction Delta-Dodecalactone (C) remove 4,134,370 + PP_3638 0.38 -0.7 4,134,481 + PP_3638 0.48 -0.7 4,134,481 + PP_3638 0.48 -1.8 4,134,481 + PP_3638 0.48 +0.1 4,134,482 - PP_3638 0.49 +0.3 4,134,588 + PP_3638 0.58 -0.7 4,134,589 - PP_3638 0.59 -0.9 4,134,589 - PP_3638 0.59 -2.0 4,134,785 + PP_3638 0.77 -1.3 4,134,786 - PP_3638 0.77 -0.2 4,134,949 + +0.6 4,134,950 - -0.4 4,135,093 + -0.9 4,135,094 - +1.6 4,135,094 - +0.7 4,135,106 + +0.6 4,135,106 + +0.0 4,135,107 - +1.1 4,135,107 - +0.6 4,135,116 + -1.3 4,135,116 + -1.6 4,135,117 - +0.6 4,135,117 - +2.7 4,135,117 - +1.5 4,135,131 - +1.8 4,135,223 - PP_3639 0.14 -0.5 4,135,284 - PP_3639 0.23 -0.8 4,135,284 - PP_3639 0.23 +0.2 4,135,548 - PP_3639 0.63 -2.0 4,135,548 - PP_3639 0.63 -0.4 4,135,548 - PP_3639 0.63 +0.1 4,135,670 - PP_3639 0.82 -0.7 4,135,670 - PP_3639 0.82 -1.0 4,135,670 - PP_3639 0.82 -1.1 4,135,670 - PP_3639 0.82 -1.1 4,135,718 - PP_3639 0.89 +0.1 4,135,718 - PP_3639 0.89 -0.4 4,135,734 - -0.0 4,135,734 - -0.6 4,135,740 + -0.6 4,135,740 + -1.0 4,135,741 - -0.3 4,135,789 + +0.1 4,135,789 + -1.3 4,135,789 + -1.6 4,135,790 - -2.0 4,135,790 - -0.7 4,135,790 - -1.3 4,135,790 - -0.4 4,135,790 - -0.7 4,135,790 - +0.2 4,135,826 + -0.5 4,135,826 + -0.3 4,135,827 - -0.2 4,135,827 - -1.0 4,135,870 + +0.4 4,135,871 - +0.6 4,136,196 - PP_3640 0.44 -0.7 4,136,320 + PP_3640 0.57 -0.1 4,136,320 + PP_3640 0.57 -0.6 4,136,321 - PP_3640 0.57 +0.5 4,136,597 + PP_3640 0.87 -0.4 4,136,597 + PP_3640 0.87 +0.4 4,136,615 - PP_3640 0.89 -0.9
Or see this region's nucleotide sequence