Experiment: Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3687 and Atu3688 are separated by 53 nucleotides Atu3688 and Atu3689 overlap by 4 nucleotides Atu3689 and Atu3690 overlap by 4 nucleotides Atu3690 and Atu3691 overlap by 8 nucleotides
Atu3687: Atu3687 - TonB-dependent receptor, at 760,897 to 763,335
Atu3687
Atu3688: Atu3688 - iron(III ABC transporter permease dicitrate ABC transporter permease, at 763,389 to 764,309
Atu3688
Atu3689: Atu3689 - iron(III ABC transporter permease dicitrate ABC transporter permease, at 764,306 to 765,355
Atu3689
Atu3690: Atu3690 - iron (III ABC transporter permease dicitrate ABC transporter permease, at 765,352 to 766,326
Atu3690
Atu3691: Atu3691 - iron (III) dicitrate ABC transporter ATPase, at 766,319 to 767,122
Atu3691
Position (kb) 764
765
766 Strain fitness (log2 ratio) -2
-1
0
1 at 763.453 kb on + strand at 763.476 kb on + strand at 763.484 kb on - strand, within Atu3688 at 763.484 kb on - strand, within Atu3688 at 763.609 kb on + strand, within Atu3688 at 763.628 kb on + strand, within Atu3688 at 763.950 kb on - strand, within Atu3688 at 764.071 kb on + strand, within Atu3688 at 764.378 kb on + strand at 764.448 kb on + strand, within Atu3689 at 764.449 kb on + strand, within Atu3689 at 764.462 kb on + strand, within Atu3689 at 764.464 kb on - strand, within Atu3689 at 764.470 kb on - strand, within Atu3689 at 764.564 kb on + strand, within Atu3689 at 764.834 kb on + strand, within Atu3689 at 764.837 kb on - strand, within Atu3689 at 764.866 kb on + strand, within Atu3689 at 764.960 kb on - strand, within Atu3689 at 765.000 kb on + strand, within Atu3689 at 765.008 kb on - strand, within Atu3689 at 765.050 kb on + strand, within Atu3689 at 765.099 kb on + strand, within Atu3689 at 765.107 kb on - strand, within Atu3689 at 765.107 kb on - strand, within Atu3689 at 765.290 kb on + strand at 765.298 kb on - strand at 765.414 kb on - strand at 765.419 kb on - strand at 765.419 kb on - strand at 765.577 kb on + strand, within Atu3690 at 765.785 kb on + strand, within Atu3690 at 765.785 kb on + strand, within Atu3690 at 765.785 kb on + strand, within Atu3690 at 765.785 kb on + strand, within Atu3690 at 765.785 kb on + strand, within Atu3690 at 765.793 kb on - strand, within Atu3690 at 765.893 kb on + strand, within Atu3690 at 765.898 kb on + strand, within Atu3690 at 766.010 kb on + strand, within Atu3690 at 766.023 kb on + strand, within Atu3690 at 766.104 kb on - strand, within Atu3690
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 763,453 + -0.5 763,476 + -1.7 763,484 - Atu3688 0.10 -0.5 763,484 - Atu3688 0.10 -0.7 763,609 + Atu3688 0.24 -1.9 763,628 + Atu3688 0.26 -1.6 763,950 - Atu3688 0.61 -0.8 764,071 + Atu3688 0.74 +0.2 764,378 + -1.5 764,448 + Atu3689 0.14 -1.0 764,449 + Atu3689 0.14 -0.9 764,462 + Atu3689 0.15 -1.2 764,464 - Atu3689 0.15 -1.6 764,470 - Atu3689 0.16 -2.4 764,564 + Atu3689 0.25 -1.4 764,834 + Atu3689 0.50 -1.7 764,837 - Atu3689 0.51 -1.3 764,866 + Atu3689 0.53 -0.7 764,960 - Atu3689 0.62 +0.9 765,000 + Atu3689 0.66 -0.7 765,008 - Atu3689 0.67 -1.3 765,050 + Atu3689 0.71 -0.9 765,099 + Atu3689 0.76 -0.9 765,107 - Atu3689 0.76 -1.9 765,107 - Atu3689 0.76 -1.0 765,290 + -1.4 765,298 - -0.6 765,414 - -1.4 765,419 - -1.2 765,419 - -1.8 765,577 + Atu3690 0.23 -1.5 765,785 + Atu3690 0.44 -0.9 765,785 + Atu3690 0.44 -1.2 765,785 + Atu3690 0.44 +0.1 765,785 + Atu3690 0.44 -1.1 765,785 + Atu3690 0.44 -2.1 765,793 - Atu3690 0.45 -1.0 765,893 + Atu3690 0.55 -0.5 765,898 + Atu3690 0.56 -1.8 766,010 + Atu3690 0.67 -1.6 766,023 + Atu3690 0.69 +0.3 766,104 - Atu3690 0.77 -1.2
Or see this region's nucleotide sequence