Experiment: Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3686 and Atu3687 are separated by 133 nucleotides Atu3687 and Atu3688 are separated by 53 nucleotides Atu3688 and Atu3689 overlap by 4 nucleotides
Atu3686: Atu3686 - siderophore biosynthesis protein, at 759,870 to 760,763
Atu3686
Atu3687: Atu3687 - TonB-dependent receptor, at 760,897 to 763,335
Atu3687
Atu3688: Atu3688 - iron(III ABC transporter permease dicitrate ABC transporter permease, at 763,389 to 764,309
Atu3688
Atu3689: Atu3689 - iron(III ABC transporter permease dicitrate ABC transporter permease, at 764,306 to 765,355
Atu3689
Position (kb) 760
761
762
763
764 Strain fitness (log2 ratio) -2
-1
0
1 at 759.948 kb on - strand at 759.966 kb on - strand, within Atu3686 at 760.091 kb on - strand, within Atu3686 at 760.112 kb on - strand, within Atu3686 at 760.208 kb on + strand, within Atu3686 at 760.208 kb on + strand, within Atu3686 at 760.216 kb on - strand, within Atu3686 at 760.323 kb on + strand, within Atu3686 at 760.350 kb on - strand, within Atu3686 at 760.376 kb on - strand, within Atu3686 at 760.503 kb on - strand, within Atu3686 at 760.511 kb on + strand, within Atu3686 at 760.657 kb on + strand, within Atu3686 at 760.667 kb on - strand, within Atu3686 at 760.688 kb on - strand at 760.728 kb on - strand at 760.941 kb on + strand at 760.949 kb on + strand at 760.949 kb on + strand at 760.949 kb on + strand at 760.949 kb on + strand at 760.949 kb on - strand at 760.957 kb on - strand at 761.008 kb on + strand at 761.008 kb on + strand at 761.016 kb on - strand at 761.016 kb on - strand at 761.016 kb on - strand at 761.020 kb on + strand at 761.065 kb on + strand at 761.176 kb on - strand, within Atu3687 at 761.188 kb on - strand, within Atu3687 at 761.255 kb on + strand, within Atu3687 at 761.263 kb on - strand, within Atu3687 at 761.313 kb on - strand, within Atu3687 at 761.395 kb on - strand, within Atu3687 at 761.412 kb on + strand, within Atu3687 at 761.412 kb on + strand, within Atu3687 at 761.420 kb on - strand, within Atu3687 at 761.432 kb on + strand, within Atu3687 at 761.440 kb on - strand, within Atu3687 at 761.452 kb on + strand, within Atu3687 at 761.479 kb on + strand, within Atu3687 at 761.530 kb on + strand, within Atu3687 at 761.542 kb on + strand, within Atu3687 at 761.616 kb on + strand, within Atu3687 at 761.662 kb on + strand, within Atu3687 at 761.662 kb on + strand, within Atu3687 at 761.662 kb on + strand, within Atu3687 at 761.662 kb on + strand, within Atu3687 at 761.670 kb on - strand, within Atu3687 at 761.670 kb on - strand, within Atu3687 at 761.670 kb on - strand, within Atu3687 at 761.801 kb on + strand, within Atu3687 at 761.816 kb on - strand, within Atu3687 at 761.821 kb on + strand, within Atu3687 at 761.821 kb on + strand, within Atu3687 at 761.967 kb on - strand, within Atu3687 at 762.027 kb on - strand, within Atu3687 at 762.079 kb on + strand, within Atu3687 at 762.110 kb on + strand, within Atu3687 at 762.209 kb on - strand, within Atu3687 at 762.260 kb on + strand, within Atu3687 at 762.268 kb on - strand, within Atu3687 at 762.286 kb on + strand, within Atu3687 at 762.294 kb on + strand, within Atu3687 at 762.294 kb on - strand, within Atu3687 at 762.383 kb on - strand, within Atu3687 at 762.404 kb on - strand, within Atu3687 at 762.419 kb on + strand, within Atu3687 at 762.429 kb on + strand, within Atu3687 at 762.437 kb on - strand, within Atu3687 at 762.507 kb on - strand, within Atu3687 at 762.507 kb on - strand, within Atu3687 at 762.512 kb on - strand, within Atu3687 at 762.572 kb on - strand, within Atu3687 at 762.622 kb on + strand, within Atu3687 at 762.676 kb on + strand, within Atu3687 at 762.709 kb on + strand, within Atu3687 at 762.709 kb on + strand, within Atu3687 at 762.709 kb on + strand, within Atu3687 at 762.799 kb on - strand, within Atu3687 at 762.939 kb on + strand, within Atu3687 at 762.939 kb on + strand, within Atu3687 at 762.947 kb on - strand, within Atu3687 at 762.974 kb on - strand, within Atu3687 at 763.055 kb on + strand, within Atu3687 at 763.073 kb on - strand, within Atu3687 at 763.073 kb on - strand, within Atu3687 at 763.160 kb on - strand at 763.190 kb on - strand at 763.453 kb on + strand at 763.476 kb on + strand at 763.484 kb on - strand, within Atu3688 at 763.484 kb on - strand, within Atu3688 at 763.609 kb on + strand, within Atu3688 at 763.628 kb on + strand, within Atu3688 at 763.950 kb on - strand, within Atu3688 at 764.071 kb on + strand, within Atu3688
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 759,948 - -0.2 759,966 - Atu3686 0.11 -0.1 760,091 - Atu3686 0.25 +0.3 760,112 - Atu3686 0.27 +0.1 760,208 + Atu3686 0.38 +0.0 760,208 + Atu3686 0.38 -0.2 760,216 - Atu3686 0.39 -0.0 760,323 + Atu3686 0.51 -0.4 760,350 - Atu3686 0.54 +0.0 760,376 - Atu3686 0.57 -0.0 760,503 - Atu3686 0.71 -0.1 760,511 + Atu3686 0.72 -0.1 760,657 + Atu3686 0.88 +0.2 760,667 - Atu3686 0.89 -1.1 760,688 - +0.8 760,728 - -0.4 760,941 + -0.9 760,949 + -0.4 760,949 + -0.4 760,949 + -0.3 760,949 + -0.8 760,949 - -0.4 760,957 - -0.7 761,008 + +0.2 761,008 + -0.3 761,016 - -0.6 761,016 - -0.5 761,016 - -0.1 761,020 + -0.5 761,065 + -0.5 761,176 - Atu3687 0.11 -0.7 761,188 - Atu3687 0.12 -0.6 761,255 + Atu3687 0.15 +0.0 761,263 - Atu3687 0.15 -1.3 761,313 - Atu3687 0.17 -0.6 761,395 - Atu3687 0.20 -0.6 761,412 + Atu3687 0.21 +0.4 761,412 + Atu3687 0.21 -0.1 761,420 - Atu3687 0.21 -0.3 761,432 + Atu3687 0.22 -0.2 761,440 - Atu3687 0.22 -0.5 761,452 + Atu3687 0.23 -1.0 761,479 + Atu3687 0.24 -0.9 761,530 + Atu3687 0.26 -0.1 761,542 + Atu3687 0.26 -0.9 761,616 + Atu3687 0.29 +1.1 761,662 + Atu3687 0.31 -1.0 761,662 + Atu3687 0.31 -0.7 761,662 + Atu3687 0.31 -1.0 761,662 + Atu3687 0.31 -0.1 761,670 - Atu3687 0.32 -0.8 761,670 - Atu3687 0.32 -0.0 761,670 - Atu3687 0.32 +0.6 761,801 + Atu3687 0.37 -0.6 761,816 - Atu3687 0.38 +0.1 761,821 + Atu3687 0.38 -0.7 761,821 + Atu3687 0.38 -0.3 761,967 - Atu3687 0.44 -1.1 762,027 - Atu3687 0.46 -0.6 762,079 + Atu3687 0.48 -0.2 762,110 + Atu3687 0.50 -0.3 762,209 - Atu3687 0.54 -0.1 762,260 + Atu3687 0.56 -0.2 762,268 - Atu3687 0.56 -0.7 762,286 + Atu3687 0.57 +0.6 762,294 + Atu3687 0.57 -2.1 762,294 - Atu3687 0.57 -0.5 762,383 - Atu3687 0.61 -0.5 762,404 - Atu3687 0.62 -0.1 762,419 + Atu3687 0.62 -0.2 762,429 + Atu3687 0.63 -0.6 762,437 - Atu3687 0.63 +0.3 762,507 - Atu3687 0.66 -0.4 762,507 - Atu3687 0.66 -0.9 762,512 - Atu3687 0.66 -0.7 762,572 - Atu3687 0.69 -0.1 762,622 + Atu3687 0.71 -0.8 762,676 + Atu3687 0.73 -0.6 762,709 + Atu3687 0.74 -0.6 762,709 + Atu3687 0.74 -0.7 762,709 + Atu3687 0.74 -0.7 762,799 - Atu3687 0.78 -0.2 762,939 + Atu3687 0.84 -0.3 762,939 + Atu3687 0.84 -0.7 762,947 - Atu3687 0.84 -0.6 762,974 - Atu3687 0.85 +0.9 763,055 + Atu3687 0.88 -0.6 763,073 - Atu3687 0.89 -0.8 763,073 - Atu3687 0.89 -2.1 763,160 - -0.6 763,190 - -1.3 763,453 + -0.5 763,476 + -1.7 763,484 - Atu3688 0.10 -0.5 763,484 - Atu3688 0.10 -0.7 763,609 + Atu3688 0.24 -1.9 763,628 + Atu3688 0.26 -1.6 763,950 - Atu3688 0.61 -0.8 764,071 + Atu3688 0.74 +0.2
Or see this region's nucleotide sequence