Strain Fitness in Pseudomonas putida KT2440 around PP_4778

Experiment: Protocatechuic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4776 and PP_4777 are separated by 53 nucleotidesPP_4777 and PP_4778 are separated by 35 nucleotidesPP_4778 and PP_4779 are separated by 6 nucleotides PP_4776: PP_4776 - AsnC family transcriptional regulator, at 5,437,954 to 5,438,430 _4776 PP_4777: PP_4777 - conserved protein of unknown function, at 5,438,484 to 5,438,687 _4777 PP_4778: PP_4778 - 23S rRNA pseudouridine 2457 synthase, at 5,438,723 to 5,439,355 _4778 PP_4779: PP_4779 - AMP nucleosidase, at 5,439,362 to 5,440,825 _4779 Position (kb) 5438 5439 5440Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5437.737 kb on + strandat 5437.738 kb on - strandat 5437.738 kb on - strandat 5437.834 kb on + strandat 5437.835 kb on - strandat 5438.098 kb on + strand, within PP_4776at 5438.098 kb on + strand, within PP_4776at 5438.099 kb on - strand, within PP_4776at 5438.099 kb on - strand, within PP_4776at 5438.099 kb on - strand, within PP_4776at 5438.099 kb on - strand, within PP_4776at 5438.100 kb on + strand, within PP_4776at 5438.100 kb on + strand, within PP_4776at 5438.100 kb on + strand, within PP_4776at 5438.100 kb on + strand, within PP_4776at 5438.100 kb on + strand, within PP_4776at 5438.101 kb on - strand, within PP_4776at 5438.101 kb on - strand, within PP_4776at 5438.101 kb on - strand, within PP_4776at 5438.101 kb on - strand, within PP_4776at 5438.159 kb on - strand, within PP_4776at 5438.159 kb on - strand, within PP_4776at 5438.168 kb on + strand, within PP_4776at 5438.168 kb on + strand, within PP_4776at 5438.168 kb on + strand, within PP_4776at 5438.168 kb on + strand, within PP_4776at 5438.168 kb on + strand, within PP_4776at 5438.169 kb on - strand, within PP_4776at 5438.169 kb on - strand, within PP_4776at 5438.169 kb on - strand, within PP_4776at 5438.169 kb on - strand, within PP_4776at 5438.169 kb on - strand, within PP_4776at 5438.172 kb on + strand, within PP_4776at 5438.173 kb on - strand, within PP_4776at 5438.173 kb on - strand, within PP_4776at 5438.173 kb on - strand, within PP_4776at 5438.275 kb on + strand, within PP_4776at 5438.328 kb on - strand, within PP_4776at 5438.429 kb on - strandat 5438.429 kb on - strandat 5438.449 kb on + strandat 5438.450 kb on - strandat 5438.450 kb on - strandat 5438.450 kb on - strandat 5438.450 kb on - strandat 5438.451 kb on + strandat 5438.452 kb on - strandat 5438.683 kb on + strandat 5438.683 kb on + strandat 5438.683 kb on + strandat 5438.683 kb on + strandat 5438.683 kb on + strandat 5438.683 kb on + strandat 5438.684 kb on - strandat 5438.684 kb on - strandat 5438.684 kb on - strandat 5438.684 kb on - strandat 5438.685 kb on + strandat 5438.686 kb on - strandat 5438.686 kb on - strandat 5438.686 kb on - strandat 5438.724 kb on + strandat 5438.725 kb on - strandat 5438.855 kb on - strand, within PP_4778at 5439.054 kb on + strand, within PP_4778at 5439.054 kb on + strand, within PP_4778at 5439.054 kb on + strand, within PP_4778at 5439.055 kb on - strand, within PP_4778at 5439.055 kb on - strand, within PP_4778at 5439.164 kb on + strand, within PP_4778at 5439.164 kb on + strand, within PP_4778at 5439.165 kb on - strand, within PP_4778at 5439.338 kb on - strandat 5439.483 kb on + strandat 5439.483 kb on + strandat 5439.483 kb on + strandat 5439.484 kb on - strandat 5439.484 kb on - strandat 5439.776 kb on + strand, within PP_4779at 5439.777 kb on - strand, within PP_4779at 5439.844 kb on + strand, within PP_4779at 5439.846 kb on + strand, within PP_4779at 5439.846 kb on + strand, within PP_4779at 5439.846 kb on + strand, within PP_4779at 5439.846 kb on + strand, within PP_4779at 5439.846 kb on + strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.847 kb on - strand, within PP_4779at 5439.864 kb on + strand, within PP_4779at 5439.998 kb on - strand, within PP_4779at 5439.998 kb on - strand, within PP_4779at 5440.029 kb on + strand, within PP_4779at 5440.029 kb on + strand, within PP_4779at 5440.132 kb on + strand, within PP_4779at 5440.132 kb on + strand, within PP_4779at 5440.132 kb on + strand, within PP_4779at 5440.132 kb on + strand, within PP_4779at 5440.132 kb on + strand, within PP_4779at 5440.133 kb on - strand, within PP_4779at 5440.133 kb on - strand, within PP_4779at 5440.133 kb on - strand, within PP_4779at 5440.136 kb on + strand, within PP_4779at 5440.136 kb on + strand, within PP_4779at 5440.137 kb on - strand, within PP_4779at 5440.137 kb on - strand, within PP_4779at 5440.194 kb on + strand, within PP_4779at 5440.194 kb on + strand, within PP_4779at 5440.195 kb on - strandat 5440.195 kb on - strand, within PP_4779at 5440.203 kb on + strand, within PP_4779at 5440.203 kb on + strand, within PP_4779at 5440.204 kb on - strand, within PP_4779at 5440.204 kb on - strand, within PP_4779at 5440.204 kb on - strand, within PP_4779at 5440.229 kb on + strand, within PP_4779at 5440.229 kb on + strand, within PP_4779at 5440.229 kb on + strand, within PP_4779at 5440.229 kb on + strand, within PP_4779at 5440.230 kb on - strand, within PP_4779at 5440.230 kb on - strand, within PP_4779at 5440.230 kb on - strand, within PP_4779at 5440.254 kb on + strand, within PP_4779at 5440.254 kb on + strand, within PP_4779at 5440.255 kb on - strand, within PP_4779at 5440.271 kb on + strand, within PP_4779at 5440.271 kb on + strand, within PP_4779at 5440.339 kb on - strand, within PP_4779at 5440.339 kb on - strand, within PP_4779at 5440.339 kb on - strand, within PP_4779

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
remove
5,437,737 + -0.4
5,437,738 - -0.4
5,437,738 - +0.7
5,437,834 + -0.2
5,437,835 - +0.4
5,438,098 + PP_4776 0.30 +0.1
5,438,098 + PP_4776 0.30 -0.0
5,438,099 - PP_4776 0.30 +0.3
5,438,099 - PP_4776 0.30 +0.2
5,438,099 - PP_4776 0.30 -0.2
5,438,099 - PP_4776 0.30 -0.0
5,438,100 + PP_4776 0.31 -0.8
5,438,100 + PP_4776 0.31 +1.3
5,438,100 + PP_4776 0.31 +0.2
5,438,100 + PP_4776 0.31 -2.1
5,438,100 + PP_4776 0.31 -0.4
5,438,101 - PP_4776 0.31 +0.5
5,438,101 - PP_4776 0.31 -0.8
5,438,101 - PP_4776 0.31 +0.2
5,438,101 - PP_4776 0.31 -0.4
5,438,159 - PP_4776 0.43 -0.5
5,438,159 - PP_4776 0.43 -0.3
5,438,168 + PP_4776 0.45 -0.4
5,438,168 + PP_4776 0.45 -0.2
5,438,168 + PP_4776 0.45 +1.1
5,438,168 + PP_4776 0.45 +0.6
5,438,168 + PP_4776 0.45 -2.1
5,438,169 - PP_4776 0.45 -0.3
5,438,169 - PP_4776 0.45 +0.4
5,438,169 - PP_4776 0.45 -0.4
5,438,169 - PP_4776 0.45 -1.7
5,438,169 - PP_4776 0.45 +0.3
5,438,172 + PP_4776 0.46 +0.8
5,438,173 - PP_4776 0.46 +0.6
5,438,173 - PP_4776 0.46 -1.0
5,438,173 - PP_4776 0.46 +0.8
5,438,275 + PP_4776 0.67 +0.4
5,438,328 - PP_4776 0.78 -0.4
5,438,429 - +0.5
5,438,429 - -0.0
5,438,449 + +0.6
5,438,450 - +2.2
5,438,450 - -0.6
5,438,450 - -0.7
5,438,450 - +0.3
5,438,451 + -0.4
5,438,452 - -0.0
5,438,683 + -0.3
5,438,683 + +0.5
5,438,683 + +0.1
5,438,683 + -1.0
5,438,683 + -0.2
5,438,683 + -3.3
5,438,684 - +0.2
5,438,684 - -0.7
5,438,684 - -0.1
5,438,684 - +0.2
5,438,685 + +0.5
5,438,686 - +0.2
5,438,686 - +0.4
5,438,686 - -0.4
5,438,724 + +0.3
5,438,725 - +0.3
5,438,855 - PP_4778 0.21 -0.0
5,439,054 + PP_4778 0.52 +0.1
5,439,054 + PP_4778 0.52 +0.8
5,439,054 + PP_4778 0.52 -0.9
5,439,055 - PP_4778 0.52 +0.6
5,439,055 - PP_4778 0.52 +1.7
5,439,164 + PP_4778 0.70 +1.0
5,439,164 + PP_4778 0.70 -0.0
5,439,165 - PP_4778 0.70 +1.0
5,439,338 - +0.5
5,439,483 + -0.0
5,439,483 + +0.3
5,439,483 + +0.7
5,439,484 - -2.4
5,439,484 - -0.4
5,439,776 + PP_4779 0.28 -0.2
5,439,777 - PP_4779 0.28 -0.0
5,439,844 + PP_4779 0.33 +0.3
5,439,846 + PP_4779 0.33 -0.2
5,439,846 + PP_4779 0.33 -0.1
5,439,846 + PP_4779 0.33 -0.0
5,439,846 + PP_4779 0.33 -0.6
5,439,846 + PP_4779 0.33 -0.0
5,439,847 - PP_4779 0.33 -0.2
5,439,847 - PP_4779 0.33 +0.4
5,439,847 - PP_4779 0.33 +0.5
5,439,847 - PP_4779 0.33 +0.2
5,439,847 - PP_4779 0.33 -0.5
5,439,847 - PP_4779 0.33 +0.1
5,439,847 - PP_4779 0.33 +0.5
5,439,847 - PP_4779 0.33 -0.9
5,439,847 - PP_4779 0.33 -0.6
5,439,847 - PP_4779 0.33 -0.9
5,439,847 - PP_4779 0.33 -0.2
5,439,847 - PP_4779 0.33 +0.8
5,439,864 + PP_4779 0.34 +0.0
5,439,998 - PP_4779 0.43 -0.4
5,439,998 - PP_4779 0.43 +0.3
5,440,029 + PP_4779 0.46 +0.4
5,440,029 + PP_4779 0.46 -0.8
5,440,132 + PP_4779 0.53 -0.7
5,440,132 + PP_4779 0.53 +0.3
5,440,132 + PP_4779 0.53 -0.6
5,440,132 + PP_4779 0.53 +0.6
5,440,132 + PP_4779 0.53 +0.5
5,440,133 - PP_4779 0.53 +0.2
5,440,133 - PP_4779 0.53 +0.0
5,440,133 - PP_4779 0.53 +0.1
5,440,136 + PP_4779 0.53 +0.3
5,440,136 + PP_4779 0.53 -0.0
5,440,137 - PP_4779 0.53 +1.1
5,440,137 - PP_4779 0.53 -0.6
5,440,194 + PP_4779 0.57 -0.1
5,440,194 + PP_4779 0.57 -1.2
5,440,195 - -0.2
5,440,195 - PP_4779 0.57 -0.5
5,440,203 + PP_4779 0.57 -0.1
5,440,203 + PP_4779 0.57 -0.7
5,440,204 - PP_4779 0.58 -1.5
5,440,204 - PP_4779 0.58 +0.4
5,440,204 - PP_4779 0.58 +0.4
5,440,229 + PP_4779 0.59 +0.2
5,440,229 + PP_4779 0.59 -2.9
5,440,229 + PP_4779 0.59 -0.9
5,440,229 + PP_4779 0.59 -0.6
5,440,230 - PP_4779 0.59 -0.5
5,440,230 - PP_4779 0.59 +0.9
5,440,230 - PP_4779 0.59 +0.2
5,440,254 + PP_4779 0.61 -0.7
5,440,254 + PP_4779 0.61 +0.1
5,440,255 - PP_4779 0.61 -0.4
5,440,271 + PP_4779 0.62 -1.6
5,440,271 + PP_4779 0.62 -0.1
5,440,339 - PP_4779 0.67 -0.2
5,440,339 - PP_4779 0.67 +0.7
5,440,339 - PP_4779 0.67 +0.7

Or see this region's nucleotide sequence