Strain Fitness in Pseudomonas putida KT2440 around PP_4780

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4779 and PP_4780 are separated by 105 nucleotidesPP_4780 and PP_4781 are separated by 207 nucleotides PP_4779: PP_4779 - AMP nucleosidase, at 5,439,362 to 5,440,825 _4779 PP_4780: PP_4780 - putative Acyl-CoA dehydrogenase, at 5,440,931 to 5,442,583 _4780 PP_4781: PP_4781 - Sensor histidine kinase, at 5,442,791 to 5,444,779 _4781 Position (kb) 5440 5441 5442 5443Strain fitness (log2 ratio) -3 -2 -1 0 1at 5439.998 kb on - strand, within PP_4779at 5439.998 kb on - strand, within PP_4779at 5440.029 kb on + strand, within PP_4779at 5440.029 kb on + strand, within PP_4779at 5440.132 kb on + strand, within PP_4779at 5440.132 kb on + strand, within PP_4779at 5440.132 kb on + strand, within PP_4779at 5440.132 kb on + strand, within PP_4779at 5440.132 kb on + strand, within PP_4779at 5440.133 kb on - strand, within PP_4779at 5440.133 kb on - strand, within PP_4779at 5440.133 kb on - strand, within PP_4779at 5440.136 kb on + strand, within PP_4779at 5440.136 kb on + strand, within PP_4779at 5440.137 kb on - strand, within PP_4779at 5440.137 kb on - strand, within PP_4779at 5440.194 kb on + strand, within PP_4779at 5440.194 kb on + strand, within PP_4779at 5440.195 kb on - strandat 5440.195 kb on - strand, within PP_4779at 5440.203 kb on + strand, within PP_4779at 5440.203 kb on + strand, within PP_4779at 5440.204 kb on - strand, within PP_4779at 5440.204 kb on - strand, within PP_4779at 5440.204 kb on - strand, within PP_4779at 5440.229 kb on + strand, within PP_4779at 5440.229 kb on + strand, within PP_4779at 5440.229 kb on + strand, within PP_4779at 5440.229 kb on + strand, within PP_4779at 5440.230 kb on - strand, within PP_4779at 5440.230 kb on - strand, within PP_4779at 5440.230 kb on - strand, within PP_4779at 5440.254 kb on + strand, within PP_4779at 5440.254 kb on + strand, within PP_4779at 5440.255 kb on - strand, within PP_4779at 5440.271 kb on + strand, within PP_4779at 5440.271 kb on + strand, within PP_4779at 5440.339 kb on - strand, within PP_4779at 5440.339 kb on - strand, within PP_4779at 5440.339 kb on - strand, within PP_4779at 5440.455 kb on + strand, within PP_4779at 5440.455 kb on + strand, within PP_4779at 5440.456 kb on - strand, within PP_4779at 5440.493 kb on + strand, within PP_4779at 5440.506 kb on + strand, within PP_4779at 5440.506 kb on + strand, within PP_4779at 5440.506 kb on + strand, within PP_4779at 5440.506 kb on + strand, within PP_4779at 5440.507 kb on - strand, within PP_4779at 5440.542 kb on + strand, within PP_4779at 5440.581 kb on + strand, within PP_4779at 5440.581 kb on + strand, within PP_4779at 5440.581 kb on + strand, within PP_4779at 5440.582 kb on - strand, within PP_4779at 5440.582 kb on - strand, within PP_4779at 5440.609 kb on - strand, within PP_4779at 5440.644 kb on + strand, within PP_4779at 5440.644 kb on + strand, within PP_4779at 5440.644 kb on + strand, within PP_4779at 5440.645 kb on - strand, within PP_4779at 5440.647 kb on + strand, within PP_4779at 5440.647 kb on + strand, within PP_4779at 5440.647 kb on + strand, within PP_4779at 5440.647 kb on + strand, within PP_4779at 5440.648 kb on - strand, within PP_4779at 5440.738 kb on + strandat 5440.738 kb on + strandat 5440.738 kb on + strandat 5440.739 kb on - strandat 5440.879 kb on + strandat 5440.880 kb on - strandat 5440.883 kb on + strandat 5440.883 kb on + strandat 5440.883 kb on + strandat 5440.883 kb on + strandat 5440.883 kb on + strandat 5440.884 kb on - strandat 5440.884 kb on - strandat 5440.884 kb on - strandat 5440.884 kb on - strandat 5440.884 kb on - strandat 5440.932 kb on + strandat 5440.932 kb on + strandat 5440.952 kb on - strandat 5440.979 kb on + strandat 5440.979 kb on + strandat 5440.980 kb on - strandat 5440.980 kb on - strandat 5440.980 kb on - strandat 5440.980 kb on - strandat 5441.002 kb on - strandat 5441.101 kb on + strand, within PP_4780at 5441.234 kb on + strand, within PP_4780at 5441.355 kb on + strand, within PP_4780at 5441.422 kb on - strand, within PP_4780at 5441.811 kb on + strand, within PP_4780at 5441.812 kb on - strand, within PP_4780at 5441.812 kb on - strand, within PP_4780at 5441.946 kb on + strand, within PP_4780at 5441.947 kb on - strand, within PP_4780at 5441.947 kb on - strand, within PP_4780at 5441.947 kb on - strand, within PP_4780at 5441.947 kb on - strand, within PP_4780at 5441.980 kb on - strand, within PP_4780at 5442.088 kb on - strand, within PP_4780at 5442.117 kb on + strand, within PP_4780at 5442.118 kb on - strand, within PP_4780at 5442.213 kb on + strand, within PP_4780at 5442.213 kb on + strand, within PP_4780at 5442.214 kb on - strand, within PP_4780at 5442.266 kb on + strand, within PP_4780at 5442.266 kb on + strand, within PP_4780at 5442.267 kb on - strand, within PP_4780at 5442.313 kb on - strand, within PP_4780at 5442.435 kb on + strandat 5442.435 kb on + strandat 5442.435 kb on + strandat 5442.436 kb on - strandat 5442.436 kb on - strandat 5442.436 kb on - strandat 5442.436 kb on - strandat 5442.643 kb on - strandat 5442.657 kb on + strandat 5442.657 kb on + strandat 5442.658 kb on - strandat 5442.658 kb on - strandat 5442.664 kb on + strandat 5442.665 kb on - strandat 5442.704 kb on + strandat 5442.714 kb on + strandat 5442.715 kb on - strandat 5442.715 kb on - strandat 5443.042 kb on + strand, within PP_4781at 5443.060 kb on + strand, within PP_4781at 5443.236 kb on + strand, within PP_4781at 5443.266 kb on + strand, within PP_4781at 5443.354 kb on + strand, within PP_4781at 5443.354 kb on + strand, within PP_4781at 5443.355 kb on - strand, within PP_4781at 5443.355 kb on - strand, within PP_4781at 5443.372 kb on + strand, within PP_4781at 5443.372 kb on + strand, within PP_4781at 5443.373 kb on - strand, within PP_4781at 5443.413 kb on + strand, within PP_4781at 5443.413 kb on + strand, within PP_4781at 5443.414 kb on - strand, within PP_4781at 5443.570 kb on + strand, within PP_4781at 5443.570 kb on + strand, within PP_4781

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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5,439,998 - PP_4779 0.43 +0.2
5,439,998 - PP_4779 0.43 -1.0
5,440,029 + PP_4779 0.46 -0.4
5,440,029 + PP_4779 0.46 -0.1
5,440,132 + PP_4779 0.53 -3.6
5,440,132 + PP_4779 0.53 -1.2
5,440,132 + PP_4779 0.53 +0.1
5,440,132 + PP_4779 0.53 +0.2
5,440,132 + PP_4779 0.53 +0.6
5,440,133 - PP_4779 0.53 -0.7
5,440,133 - PP_4779 0.53 -0.0
5,440,133 - PP_4779 0.53 +0.1
5,440,136 + PP_4779 0.53 +0.4
5,440,136 + PP_4779 0.53 -0.2
5,440,137 - PP_4779 0.53 -0.8
5,440,137 - PP_4779 0.53 +1.1
5,440,194 + PP_4779 0.57 +0.2
5,440,194 + PP_4779 0.57 -1.2
5,440,195 - -0.3
5,440,195 - PP_4779 0.57 +1.0
5,440,203 + PP_4779 0.57 -0.1
5,440,203 + PP_4779 0.57 -1.1
5,440,204 - PP_4779 0.58 -0.6
5,440,204 - PP_4779 0.58 -0.2
5,440,204 - PP_4779 0.58 +0.1
5,440,229 + PP_4779 0.59 +0.0
5,440,229 + PP_4779 0.59 -0.5
5,440,229 + PP_4779 0.59 -0.7
5,440,229 + PP_4779 0.59 -0.5
5,440,230 - PP_4779 0.59 -0.5
5,440,230 - PP_4779 0.59 -0.8
5,440,230 - PP_4779 0.59 +0.2
5,440,254 + PP_4779 0.61 +0.4
5,440,254 + PP_4779 0.61 -0.3
5,440,255 - PP_4779 0.61 +0.1
5,440,271 + PP_4779 0.62 -0.5
5,440,271 + PP_4779 0.62 -0.1
5,440,339 - PP_4779 0.67 +0.5
5,440,339 - PP_4779 0.67 +0.5
5,440,339 - PP_4779 0.67 +0.5
5,440,455 + PP_4779 0.75 +0.3
5,440,455 + PP_4779 0.75 +0.4
5,440,456 - PP_4779 0.75 -0.0
5,440,493 + PP_4779 0.77 -0.2
5,440,506 + PP_4779 0.78 +0.3
5,440,506 + PP_4779 0.78 -0.1
5,440,506 + PP_4779 0.78 +0.0
5,440,506 + PP_4779 0.78 +0.3
5,440,507 - PP_4779 0.78 +0.2
5,440,542 + PP_4779 0.81 -0.5
5,440,581 + PP_4779 0.83 -0.8
5,440,581 + PP_4779 0.83 -0.8
5,440,581 + PP_4779 0.83 -0.3
5,440,582 - PP_4779 0.83 -0.6
5,440,582 - PP_4779 0.83 -1.2
5,440,609 - PP_4779 0.85 +0.6
5,440,644 + PP_4779 0.88 +0.2
5,440,644 + PP_4779 0.88 -0.2
5,440,644 + PP_4779 0.88 -0.4
5,440,645 - PP_4779 0.88 +0.3
5,440,647 + PP_4779 0.88 +0.5
5,440,647 + PP_4779 0.88 +0.6
5,440,647 + PP_4779 0.88 -0.2
5,440,647 + PP_4779 0.88 +0.3
5,440,648 - PP_4779 0.88 -1.6
5,440,738 + -0.3
5,440,738 + -0.4
5,440,738 + +0.4
5,440,739 - -0.2
5,440,879 + -0.5
5,440,880 - +0.8
5,440,883 + +0.5
5,440,883 + -0.5
5,440,883 + -0.1
5,440,883 + +0.2
5,440,883 + +0.4
5,440,884 - +0.1
5,440,884 - -0.5
5,440,884 - -0.6
5,440,884 - -1.0
5,440,884 - -0.7
5,440,932 + +0.4
5,440,932 + +0.1
5,440,952 - -0.1
5,440,979 + +0.6
5,440,979 + -1.1
5,440,980 - +1.6
5,440,980 - -0.1
5,440,980 - -1.5
5,440,980 - +0.4
5,441,002 - -0.3
5,441,101 + PP_4780 0.10 +0.2
5,441,234 + PP_4780 0.18 +0.4
5,441,355 + PP_4780 0.26 +0.0
5,441,422 - PP_4780 0.30 +0.2
5,441,811 + PP_4780 0.53 -2.7
5,441,812 - PP_4780 0.53 -0.5
5,441,812 - PP_4780 0.53 -0.1
5,441,946 + PP_4780 0.61 -1.2
5,441,947 - PP_4780 0.61 -0.7
5,441,947 - PP_4780 0.61 +0.6
5,441,947 - PP_4780 0.61 -1.2
5,441,947 - PP_4780 0.61 -0.2
5,441,980 - PP_4780 0.63 +0.3
5,442,088 - PP_4780 0.70 -1.6
5,442,117 + PP_4780 0.72 +0.1
5,442,118 - PP_4780 0.72 -0.6
5,442,213 + PP_4780 0.78 +0.8
5,442,213 + PP_4780 0.78 -0.3
5,442,214 - PP_4780 0.78 -1.8
5,442,266 + PP_4780 0.81 +0.0
5,442,266 + PP_4780 0.81 -0.6
5,442,267 - PP_4780 0.81 +1.7
5,442,313 - PP_4780 0.84 +0.5
5,442,435 + -0.9
5,442,435 + -0.2
5,442,435 + +0.1
5,442,436 - -0.6
5,442,436 - -0.8
5,442,436 - -0.5
5,442,436 - -0.5
5,442,643 - +0.3
5,442,657 + -1.0
5,442,657 + +0.2
5,442,658 - +0.4
5,442,658 - +0.0
5,442,664 + +0.2
5,442,665 - -0.9
5,442,704 + +0.8
5,442,714 + -0.3
5,442,715 - -0.8
5,442,715 - +0.3
5,443,042 + PP_4781 0.13 +1.6
5,443,060 + PP_4781 0.14 -0.1
5,443,236 + PP_4781 0.22 +0.1
5,443,266 + PP_4781 0.24 -1.5
5,443,354 + PP_4781 0.28 -0.4
5,443,354 + PP_4781 0.28 +0.3
5,443,355 - PP_4781 0.28 +0.1
5,443,355 - PP_4781 0.28 +0.0
5,443,372 + PP_4781 0.29 -0.1
5,443,372 + PP_4781 0.29 +0.1
5,443,373 - PP_4781 0.29 -0.6
5,443,413 + PP_4781 0.31 +0.6
5,443,413 + PP_4781 0.31 -0.1
5,443,414 - PP_4781 0.31 -0.7
5,443,570 + PP_4781 0.39 +0.5
5,443,570 + PP_4781 0.39 +0.1

Or see this region's nucleotide sequence