Strain Fitness in Agrobacterium fabrum C58 around Atu6101

Experiment: Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6099 and Atu6100 are separated by 11 nucleotidesAtu6100 and Atu6101 are separated by 128 nucleotidesAtu6101 and Atu6103 are separated by 355 nucleotides Atu6099: Atu6099 - conserved hypothetical protein, at 119,313 to 119,915 Atu6099 Atu6100: Atu6100 - conserved hypothetical protein, at 119,927 to 120,328 Atu6100 Atu6101: Atu6101 - helicase, SNF2 family, at 120,457 to 125,538 Atu6101 Atu6103: Atu6103 - plasmid partitioning protein, at 125,894 to 127,651 Atu6103 Position (kb) 120 121 122 123 124 125 126Strain fitness (log2 ratio) -2 -1 0 1 2at 119.642 kb on + strand, within Atu6099at 119.706 kb on - strand, within Atu6099at 119.722 kb on - strand, within Atu6099at 119.736 kb on - strand, within Atu6099at 119.736 kb on - strand, within Atu6099at 119.736 kb on - strand, within Atu6099at 119.798 kb on + strand, within Atu6099at 119.801 kb on - strand, within Atu6099at 119.806 kb on - strand, within Atu6099at 119.806 kb on - strand, within Atu6099at 119.811 kb on + strand, within Atu6099at 119.819 kb on - strand, within Atu6099at 119.824 kb on + strand, within Atu6099at 119.824 kb on + strand, within Atu6099at 119.824 kb on + strand, within Atu6099at 119.824 kb on + strand, within Atu6099at 119.824 kb on + strand, within Atu6099at 119.832 kb on - strand, within Atu6099at 119.832 kb on - strand, within Atu6099at 119.832 kb on - strand, within Atu6099at 119.871 kb on - strandat 119.968 kb on - strand, within Atu6100at 119.978 kb on - strand, within Atu6100at 119.985 kb on - strand, within Atu6100at 119.985 kb on - strand, within Atu6100at 120.085 kb on - strand, within Atu6100at 120.105 kb on + strand, within Atu6100at 120.105 kb on + strand, within Atu6100at 120.105 kb on + strand, within Atu6100at 120.113 kb on - strand, within Atu6100at 120.113 kb on - strand, within Atu6100at 120.140 kb on - strand, within Atu6100at 120.162 kb on - strand, within Atu6100at 120.162 kb on - strand, within Atu6100at 120.254 kb on + strand, within Atu6100at 120.262 kb on - strand, within Atu6100at 120.269 kb on + strand, within Atu6100at 120.269 kb on + strand, within Atu6100at 120.269 kb on + strand, within Atu6100at 120.277 kb on - strand, within Atu6100at 120.277 kb on - strand, within Atu6100at 120.323 kb on + strandat 120.376 kb on + strandat 120.384 kb on - strandat 120.492 kb on + strandat 120.529 kb on - strandat 120.654 kb on - strandat 120.759 kb on - strandat 120.792 kb on - strandat 120.803 kb on + strandat 120.811 kb on - strandat 120.840 kb on - strandat 120.867 kb on + strandat 120.914 kb on - strandat 120.940 kb on + strandat 121.056 kb on - strand, within Atu6101at 121.073 kb on - strand, within Atu6101at 121.118 kb on + strand, within Atu6101at 121.139 kb on + strand, within Atu6101at 121.182 kb on - strand, within Atu6101at 121.210 kb on - strand, within Atu6101at 121.245 kb on - strand, within Atu6101at 121.320 kb on + strand, within Atu6101at 121.320 kb on + strand, within Atu6101at 121.328 kb on - strand, within Atu6101at 121.363 kb on - strand, within Atu6101at 121.399 kb on + strand, within Atu6101at 121.414 kb on + strand, within Atu6101at 121.417 kb on - strand, within Atu6101at 121.457 kb on - strand, within Atu6101at 121.467 kb on + strand, within Atu6101at 121.526 kb on - strand, within Atu6101at 121.554 kb on + strand, within Atu6101at 121.568 kb on - strand, within Atu6101at 121.654 kb on - strand, within Atu6101at 121.654 kb on - strand, within Atu6101at 121.660 kb on + strand, within Atu6101at 121.665 kb on + strand, within Atu6101at 121.668 kb on - strand, within Atu6101at 121.670 kb on + strand, within Atu6101at 121.673 kb on - strand, within Atu6101at 121.673 kb on - strand, within Atu6101at 121.684 kb on - strand, within Atu6101at 121.721 kb on - strand, within Atu6101at 121.778 kb on + strand, within Atu6101at 121.792 kb on + strand, within Atu6101at 121.918 kb on + strand, within Atu6101at 121.969 kb on - strand, within Atu6101at 121.988 kb on - strand, within Atu6101at 122.002 kb on - strand, within Atu6101at 122.064 kb on + strand, within Atu6101at 122.081 kb on + strand, within Atu6101at 122.110 kb on - strand, within Atu6101at 122.132 kb on - strand, within Atu6101at 122.142 kb on - strand, within Atu6101at 122.220 kb on - strand, within Atu6101at 122.339 kb on + strand, within Atu6101at 122.349 kb on + strand, within Atu6101at 122.374 kb on + strand, within Atu6101at 122.374 kb on + strand, within Atu6101at 122.407 kb on + strand, within Atu6101at 122.415 kb on - strand, within Atu6101at 122.452 kb on - strand, within Atu6101at 122.452 kb on - strand, within Atu6101at 122.475 kb on - strand, within Atu6101at 122.508 kb on + strand, within Atu6101at 122.516 kb on - strand, within Atu6101at 122.544 kb on + strand, within Atu6101at 122.635 kb on + strand, within Atu6101at 122.700 kb on - strand, within Atu6101at 122.805 kb on - strand, within Atu6101at 122.805 kb on - strand, within Atu6101at 122.840 kb on - strand, within Atu6101at 122.899 kb on - strand, within Atu6101at 122.914 kb on - strand, within Atu6101at 122.931 kb on + strand, within Atu6101at 122.937 kb on - strand, within Atu6101at 122.937 kb on - strand, within Atu6101at 122.937 kb on - strand, within Atu6101at 122.979 kb on - strand, within Atu6101at 122.980 kb on - strand, within Atu6101at 123.030 kb on - strand, within Atu6101at 123.113 kb on + strand, within Atu6101at 123.121 kb on - strand, within Atu6101at 123.144 kb on - strand, within Atu6101at 123.179 kb on + strand, within Atu6101at 123.180 kb on + strand, within Atu6101at 123.187 kb on - strand, within Atu6101at 123.187 kb on - strand, within Atu6101at 123.219 kb on + strand, within Atu6101at 123.224 kb on + strand, within Atu6101at 123.232 kb on - strand, within Atu6101at 123.232 kb on - strand, within Atu6101at 123.276 kb on - strand, within Atu6101at 123.314 kb on - strand, within Atu6101at 123.439 kb on - strand, within Atu6101at 123.451 kb on - strand, within Atu6101at 123.453 kb on + strand, within Atu6101at 123.469 kb on + strand, within Atu6101at 123.512 kb on - strand, within Atu6101at 123.514 kb on + strand, within Atu6101at 123.523 kb on - strand, within Atu6101at 123.536 kb on - strand, within Atu6101at 123.589 kb on - strand, within Atu6101at 123.594 kb on - strand, within Atu6101at 123.594 kb on - strand, within Atu6101at 123.684 kb on + strand, within Atu6101at 123.866 kb on - strand, within Atu6101at 123.867 kb on - strand, within Atu6101at 123.887 kb on + strand, within Atu6101at 123.895 kb on - strand, within Atu6101at 123.920 kb on - strand, within Atu6101at 123.937 kb on + strand, within Atu6101at 123.958 kb on - strand, within Atu6101at 123.958 kb on - strand, within Atu6101at 123.969 kb on + strand, within Atu6101at 124.005 kb on + strand, within Atu6101at 124.016 kb on + strand, within Atu6101at 124.032 kb on - strand, within Atu6101at 124.033 kb on + strand, within Atu6101at 124.121 kb on + strand, within Atu6101at 124.299 kb on + strand, within Atu6101at 124.302 kb on - strand, within Atu6101at 124.307 kb on - strand, within Atu6101at 124.307 kb on - strand, within Atu6101at 124.307 kb on - strand, within Atu6101at 124.339 kb on - strand, within Atu6101at 124.390 kb on + strand, within Atu6101at 124.467 kb on - strand, within Atu6101at 124.591 kb on - strand, within Atu6101at 124.606 kb on + strand, within Atu6101at 124.668 kb on + strand, within Atu6101at 124.699 kb on + strand, within Atu6101at 124.859 kb on - strand, within Atu6101at 124.859 kb on - strand, within Atu6101at 124.950 kb on - strand, within Atu6101at 125.034 kb on + strandat 125.049 kb on + strandat 125.094 kb on + strandat 125.094 kb on + strandat 125.094 kb on + strandat 125.094 kb on + strandat 125.094 kb on + strandat 125.094 kb on + strandat 125.096 kb on - strandat 125.102 kb on - strandat 125.102 kb on - strandat 125.102 kb on - strandat 125.102 kb on - strandat 125.102 kb on - strandat 125.102 kb on - strandat 125.149 kb on - strandat 125.179 kb on - strandat 125.206 kb on - strandat 125.224 kb on + strandat 125.260 kb on - strandat 125.260 kb on - strandat 125.411 kb on + strandat 125.419 kb on - strandat 125.479 kb on - strandat 125.680 kb on + strandat 125.687 kb on + strandat 125.727 kb on + strandat 125.732 kb on + strandat 125.739 kb on + strandat 125.771 kb on - strandat 125.795 kb on - strandat 125.841 kb on + strandat 125.849 kb on - strandat 125.937 kb on - strandat 126.012 kb on - strandat 126.033 kb on + strandat 126.173 kb on + strand, within Atu6103at 126.173 kb on - strand, within Atu6103at 126.196 kb on + strand, within Atu6103at 126.204 kb on - strand, within Atu6103at 126.313 kb on + strand, within Atu6103at 126.342 kb on + strand, within Atu6103at 126.342 kb on + strand, within Atu6103at 126.350 kb on - strand, within Atu6103at 126.379 kb on + strand, within Atu6103at 126.379 kb on + strand, within Atu6103at 126.387 kb on - strand, within Atu6103at 126.429 kb on - strand, within Atu6103at 126.474 kb on - strand, within Atu6103at 126.483 kb on - strand, within Atu6103at 126.485 kb on + strand, within Atu6103at 126.485 kb on - strand, within Atu6103at 126.487 kb on + strand, within Atu6103at 126.495 kb on - strand, within Atu6103at 126.519 kb on - strand, within Atu6103

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
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119,642 + Atu6099 0.55 -0.0
119,706 - Atu6099 0.65 +0.3
119,722 - Atu6099 0.68 -0.5
119,736 - Atu6099 0.70 -0.2
119,736 - Atu6099 0.70 -1.1
119,736 - Atu6099 0.70 -0.6
119,798 + Atu6099 0.80 -0.6
119,801 - Atu6099 0.81 -0.2
119,806 - Atu6099 0.82 -0.4
119,806 - Atu6099 0.82 -0.6
119,811 + Atu6099 0.83 -0.7
119,819 - Atu6099 0.84 +0.2
119,824 + Atu6099 0.85 -0.2
119,824 + Atu6099 0.85 +0.1
119,824 + Atu6099 0.85 +0.2
119,824 + Atu6099 0.85 +0.2
119,824 + Atu6099 0.85 -0.3
119,832 - Atu6099 0.86 +1.4
119,832 - Atu6099 0.86 -0.3
119,832 - Atu6099 0.86 +0.8
119,871 - +0.7
119,968 - Atu6100 0.10 -0.1
119,978 - Atu6100 0.13 +0.1
119,985 - Atu6100 0.14 +0.3
119,985 - Atu6100 0.14 +1.0
120,085 - Atu6100 0.39 -0.4
120,105 + Atu6100 0.44 -0.3
120,105 + Atu6100 0.44 +0.3
120,105 + Atu6100 0.44 +0.5
120,113 - Atu6100 0.46 -0.1
120,113 - Atu6100 0.46 +0.6
120,140 - Atu6100 0.53 +0.9
120,162 - Atu6100 0.58 +0.6
120,162 - Atu6100 0.58 +1.1
120,254 + Atu6100 0.81 +0.2
120,262 - Atu6100 0.83 +1.8
120,269 + Atu6100 0.85 +0.3
120,269 + Atu6100 0.85 -0.8
120,269 + Atu6100 0.85 +0.1
120,277 - Atu6100 0.87 -0.6
120,277 - Atu6100 0.87 -0.4
120,323 + -0.3
120,376 + +0.1
120,384 - -0.2
120,492 + -0.3
120,529 - -0.0
120,654 - +0.8
120,759 - -0.5
120,792 - -0.0
120,803 + -0.8
120,811 - -0.0
120,840 - +0.7
120,867 + +0.3
120,914 - -0.0
120,940 + -0.2
121,056 - Atu6101 0.12 +0.1
121,073 - Atu6101 0.12 -0.3
121,118 + Atu6101 0.13 -0.5
121,139 + Atu6101 0.13 +1.1
121,182 - Atu6101 0.14 +0.1
121,210 - Atu6101 0.15 -0.1
121,245 - Atu6101 0.16 -0.3
121,320 + Atu6101 0.17 -0.1
121,320 + Atu6101 0.17 -0.0
121,328 - Atu6101 0.17 +0.5
121,363 - Atu6101 0.18 +0.4
121,399 + Atu6101 0.19 +0.2
121,414 + Atu6101 0.19 -1.2
121,417 - Atu6101 0.19 +0.5
121,457 - Atu6101 0.20 -0.2
121,467 + Atu6101 0.20 +0.3
121,526 - Atu6101 0.21 +0.3
121,554 + Atu6101 0.22 +0.1
121,568 - Atu6101 0.22 +0.6
121,654 - Atu6101 0.24 +0.7
121,654 - Atu6101 0.24 +0.1
121,660 + Atu6101 0.24 -0.5
121,665 + Atu6101 0.24 -1.3
121,668 - Atu6101 0.24 -0.0
121,670 + Atu6101 0.24 +0.1
121,673 - Atu6101 0.24 +0.3
121,673 - Atu6101 0.24 +1.3
121,684 - Atu6101 0.24 -0.8
121,721 - Atu6101 0.25 +0.1
121,778 + Atu6101 0.26 -0.3
121,792 + Atu6101 0.26 +1.0
121,918 + Atu6101 0.29 -0.0
121,969 - Atu6101 0.30 -0.4
121,988 - Atu6101 0.30 -0.1
122,002 - Atu6101 0.30 +0.3
122,064 + Atu6101 0.32 -0.5
122,081 + Atu6101 0.32 -0.3
122,110 - Atu6101 0.33 -0.4
122,132 - Atu6101 0.33 +0.2
122,142 - Atu6101 0.33 +0.5
122,220 - Atu6101 0.35 -0.2
122,339 + Atu6101 0.37 +1.1
122,349 + Atu6101 0.37 -0.7
122,374 + Atu6101 0.38 +0.7
122,374 + Atu6101 0.38 -0.1
122,407 + Atu6101 0.38 -0.2
122,415 - Atu6101 0.39 +0.1
122,452 - Atu6101 0.39 +0.3
122,452 - Atu6101 0.39 +1.1
122,475 - Atu6101 0.40 +0.0
122,508 + Atu6101 0.40 +0.5
122,516 - Atu6101 0.41 +0.4
122,544 + Atu6101 0.41 +0.4
122,635 + Atu6101 0.43 -0.9
122,700 - Atu6101 0.44 -0.1
122,805 - Atu6101 0.46 -0.2
122,805 - Atu6101 0.46 +0.2
122,840 - Atu6101 0.47 -0.2
122,899 - Atu6101 0.48 +1.6
122,914 - Atu6101 0.48 -0.1
122,931 + Atu6101 0.49 +1.7
122,937 - Atu6101 0.49 +0.8
122,937 - Atu6101 0.49 -0.0
122,937 - Atu6101 0.49 +0.1
122,979 - Atu6101 0.50 -0.4
122,980 - Atu6101 0.50 -0.8
123,030 - Atu6101 0.51 -0.0
123,113 + Atu6101 0.52 +0.1
123,121 - Atu6101 0.52 -0.3
123,144 - Atu6101 0.53 +0.1
123,179 + Atu6101 0.54 +0.6
123,180 + Atu6101 0.54 -0.1
123,187 - Atu6101 0.54 -0.2
123,187 - Atu6101 0.54 +0.6
123,219 + Atu6101 0.54 -0.3
123,224 + Atu6101 0.54 -0.3
123,232 - Atu6101 0.55 -0.8
123,232 - Atu6101 0.55 -0.0
123,276 - Atu6101 0.55 -0.7
123,314 - Atu6101 0.56 -0.1
123,439 - Atu6101 0.59 -1.1
123,451 - Atu6101 0.59 -1.4
123,453 + Atu6101 0.59 -0.3
123,469 + Atu6101 0.59 -0.2
123,512 - Atu6101 0.60 +1.4
123,514 + Atu6101 0.60 -0.1
123,523 - Atu6101 0.60 +0.3
123,536 - Atu6101 0.61 -0.5
123,589 - Atu6101 0.62 +0.2
123,594 - Atu6101 0.62 +0.3
123,594 - Atu6101 0.62 +0.1
123,684 + Atu6101 0.63 -0.4
123,866 - Atu6101 0.67 -0.6
123,867 - Atu6101 0.67 -0.2
123,887 + Atu6101 0.67 +0.1
123,895 - Atu6101 0.68 -0.0
123,920 - Atu6101 0.68 +0.1
123,937 + Atu6101 0.68 +0.3
123,958 - Atu6101 0.69 -0.6
123,958 - Atu6101 0.69 +0.1
123,969 + Atu6101 0.69 +0.8
124,005 + Atu6101 0.70 -0.5
124,016 + Atu6101 0.70 +0.3
124,032 - Atu6101 0.70 -0.1
124,033 + Atu6101 0.70 -1.1
124,121 + Atu6101 0.72 +0.7
124,299 + Atu6101 0.76 +0.3
124,302 - Atu6101 0.76 -0.3
124,307 - Atu6101 0.76 -0.0
124,307 - Atu6101 0.76 +0.4
124,307 - Atu6101 0.76 +0.8
124,339 - Atu6101 0.76 +0.2
124,390 + Atu6101 0.77 +0.5
124,467 - Atu6101 0.79 -0.6
124,591 - Atu6101 0.81 -0.1
124,606 + Atu6101 0.82 +0.2
124,668 + Atu6101 0.83 -0.3
124,699 + Atu6101 0.83 +0.2
124,859 - Atu6101 0.87 +1.7
124,859 - Atu6101 0.87 +1.1
124,950 - Atu6101 0.88 -0.1
125,034 + +0.4
125,049 + -0.0
125,094 + -0.2
125,094 + -0.4
125,094 + +0.2
125,094 + -0.1
125,094 + -1.4
125,094 + +0.7
125,096 - -1.3
125,102 - +0.7
125,102 - +0.5
125,102 - +0.2
125,102 - +0.5
125,102 - +0.1
125,102 - +0.4
125,149 - +1.6
125,179 - -0.6
125,206 - +0.2
125,224 + +0.4
125,260 - +0.1
125,260 - +0.4
125,411 + -0.4
125,419 - -0.3
125,479 - +1.4
125,680 + +1.3
125,687 + -0.1
125,727 + -0.6
125,732 + -1.3
125,739 + +0.4
125,771 - -0.1
125,795 - +1.4
125,841 + -0.2
125,849 - -0.3
125,937 - -0.2
126,012 - -2.4
126,033 + -0.0
126,173 + Atu6103 0.16 +0.0
126,173 - Atu6103 0.16 +0.1
126,196 + Atu6103 0.17 +0.2
126,204 - Atu6103 0.18 +0.3
126,313 + Atu6103 0.24 -0.5
126,342 + Atu6103 0.25 +0.4
126,342 + Atu6103 0.25 -1.2
126,350 - Atu6103 0.26 -0.3
126,379 + Atu6103 0.28 +0.3
126,379 + Atu6103 0.28 +0.9
126,387 - Atu6103 0.28 -1.0
126,429 - Atu6103 0.30 +0.8
126,474 - Atu6103 0.33 -0.3
126,483 - Atu6103 0.34 +0.8
126,485 + Atu6103 0.34 -0.2
126,485 - Atu6103 0.34 +0.1
126,487 + Atu6103 0.34 +0.6
126,495 - Atu6103 0.34 +0.1
126,519 - Atu6103 0.36 -0.5

Or see this region's nucleotide sequence