Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_RNA33

Experiment: KB with Harmine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1743 and Psyr_RNA31 are separated by 296 nucleotidesPsyr_RNA31 and Psyr_RNA32 are separated by 51 nucleotidesPsyr_RNA32 and Psyr_RNA33 are separated by 56 nucleotidesPsyr_RNA33 and Psyr_1744 are separated by 189 nucleotidesPsyr_1744 and Psyr_1745 are separated by 85 nucleotides Psyr_1743: Psyr_1743 - methenyltetrahydrofolate cyclohydrolase / 5,10-methylenetetrahydrofolate dehydrogenase (NADP+), at 1,980,210 to 1,981,064 _1743 Psyr_RNA31: Psyr_RNA31 - tRNA-Arg, at 1,981,361 to 1,981,437 _RNA31 Psyr_RNA32: Psyr_RNA32 - tRNA-His, at 1,981,489 to 1,981,564 _RNA32 Psyr_RNA33: Psyr_RNA33 - tRNA-Leu, at 1,981,621 to 1,981,705 _RNA33 Psyr_1744: Psyr_1744 - lipoprotein, putative, at 1,981,895 to 1,982,386 _1744 Psyr_1745: Psyr_1745 - hypothetical protein, at 1,982,472 to 1,983,302 _1745 Position (kb) 1981 1982Strain fitness (log2 ratio) -2 -1 0 1 2at 1981.051 kb on - strandat 1981.157 kb on + strandat 1981.167 kb on - strandat 1981.568 kb on + strandat 1981.568 kb on + strandat 1981.568 kb on + strandat 1981.568 kb on + strandat 1981.568 kb on + strandat 1981.588 kb on + strandat 1981.710 kb on + strandat 1981.788 kb on + strandat 1981.791 kb on + strandat 1981.791 kb on + strandat 1981.792 kb on - strandat 1981.792 kb on - strandat 1981.913 kb on + strandat 1981.913 kb on + strandat 1981.913 kb on + strandat 1981.913 kb on + strandat 1981.914 kb on - strandat 1981.995 kb on - strand, within Psyr_1744at 1982.041 kb on + strand, within Psyr_1744at 1982.042 kb on - strand, within Psyr_1744at 1982.043 kb on + strand, within Psyr_1744at 1982.043 kb on + strand, within Psyr_1744at 1982.043 kb on + strand, within Psyr_1744at 1982.043 kb on + strand, within Psyr_1744at 1982.043 kb on + strand, within Psyr_1744at 1982.044 kb on - strand, within Psyr_1744at 1982.044 kb on - strand, within Psyr_1744at 1982.044 kb on - strand, within Psyr_1744at 1982.109 kb on + strand, within Psyr_1744at 1982.202 kb on + strand, within Psyr_1744at 1982.202 kb on + strand, within Psyr_1744at 1982.202 kb on + strand, within Psyr_1744at 1982.202 kb on + strand, within Psyr_1744at 1982.203 kb on - strand, within Psyr_1744at 1982.203 kb on - strand, within Psyr_1744at 1982.203 kb on - strand, within Psyr_1744at 1982.203 kb on - strand, within Psyr_1744at 1982.203 kb on - strand, within Psyr_1744at 1982.203 kb on - strand, within Psyr_1744at 1982.203 kb on - strand, within Psyr_1744at 1982.203 kb on - strand, within Psyr_1744at 1982.203 kb on - strand, within Psyr_1744at 1982.251 kb on + strand, within Psyr_1744at 1982.251 kb on + strand, within Psyr_1744at 1982.252 kb on - strand, within Psyr_1744at 1982.274 kb on + strand, within Psyr_1744at 1982.274 kb on + strand, within Psyr_1744at 1982.274 kb on + strand, within Psyr_1744at 1982.274 kb on + strand, within Psyr_1744at 1982.275 kb on - strand, within Psyr_1744at 1982.275 kb on - strand, within Psyr_1744at 1982.275 kb on - strand, within Psyr_1744at 1982.382 kb on + strandat 1982.382 kb on + strandat 1982.382 kb on + strandat 1982.383 kb on - strandat 1982.413 kb on + strandat 1982.413 kb on + strandat 1982.414 kb on - strandat 1982.438 kb on - strandat 1982.446 kb on + strandat 1982.529 kb on + strandat 1982.530 kb on - strandat 1982.530 kb on - strandat 1982.543 kb on + strandat 1982.544 kb on - strandat 1982.544 kb on - strandat 1982.551 kb on + strandat 1982.551 kb on + strandat 1982.551 kb on + strandat 1982.552 kb on - strandat 1982.552 kb on - strandat 1982.552 kb on - strandat 1982.552 kb on - strandat 1982.673 kb on - strand, within Psyr_1745at 1982.673 kb on - strand, within Psyr_1745at 1982.694 kb on - strand, within Psyr_1745

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmine 10 mM
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1,981,051 - -0.5
1,981,157 + -0.2
1,981,167 - -0.1
1,981,568 + +0.5
1,981,568 + +1.3
1,981,568 + +0.1
1,981,568 + -0.5
1,981,568 + +1.8
1,981,588 + +1.6
1,981,710 + -0.9
1,981,788 + +1.0
1,981,791 + +0.5
1,981,791 + -0.5
1,981,792 - -1.1
1,981,792 - +1.1
1,981,913 + -1.3
1,981,913 + -0.4
1,981,913 + +0.0
1,981,913 + -2.0
1,981,914 - +2.3
1,981,995 - Psyr_1744 0.20 +0.8
1,982,041 + Psyr_1744 0.30 -0.2
1,982,042 - Psyr_1744 0.30 +0.6
1,982,043 + Psyr_1744 0.30 -0.3
1,982,043 + Psyr_1744 0.30 -0.2
1,982,043 + Psyr_1744 0.30 +0.1
1,982,043 + Psyr_1744 0.30 -0.0
1,982,043 + Psyr_1744 0.30 -0.1
1,982,044 - Psyr_1744 0.30 +1.7
1,982,044 - Psyr_1744 0.30 +0.1
1,982,044 - Psyr_1744 0.30 +0.1
1,982,109 + Psyr_1744 0.43 -1.5
1,982,202 + Psyr_1744 0.62 -1.4
1,982,202 + Psyr_1744 0.62 -1.3
1,982,202 + Psyr_1744 0.62 +0.1
1,982,202 + Psyr_1744 0.62 +0.1
1,982,203 - Psyr_1744 0.63 +0.9
1,982,203 - Psyr_1744 0.63 -0.9
1,982,203 - Psyr_1744 0.63 -2.1
1,982,203 - Psyr_1744 0.63 -2.2
1,982,203 - Psyr_1744 0.63 +0.1
1,982,203 - Psyr_1744 0.63 -0.1
1,982,203 - Psyr_1744 0.63 -0.7
1,982,203 - Psyr_1744 0.63 +1.3
1,982,203 - Psyr_1744 0.63 -0.0
1,982,251 + Psyr_1744 0.72 +0.1
1,982,251 + Psyr_1744 0.72 -1.8
1,982,252 - Psyr_1744 0.73 -2.2
1,982,274 + Psyr_1744 0.77 -0.4
1,982,274 + Psyr_1744 0.77 -0.7
1,982,274 + Psyr_1744 0.77 -1.7
1,982,274 + Psyr_1744 0.77 +2.0
1,982,275 - Psyr_1744 0.77 -0.3
1,982,275 - Psyr_1744 0.77 +0.5
1,982,275 - Psyr_1744 0.77 +0.3
1,982,382 + -0.4
1,982,382 + +1.7
1,982,382 + -0.3
1,982,383 - -0.6
1,982,413 + +0.5
1,982,413 + +1.0
1,982,414 - +0.2
1,982,438 - -1.6
1,982,446 + -0.9
1,982,529 + -0.8
1,982,530 - -0.0
1,982,530 - +2.0
1,982,543 + -0.5
1,982,544 - -0.5
1,982,544 - -1.5
1,982,551 + -0.1
1,982,551 + -0.0
1,982,551 + +0.2
1,982,552 - -0.7
1,982,552 - +0.5
1,982,552 - +1.5
1,982,552 - -0.1
1,982,673 - Psyr_1745 0.24 +0.1
1,982,673 - Psyr_1745 0.24 -0.4
1,982,694 - Psyr_1745 0.27 +1.1

Or see this region's nucleotide sequence