Experiment: KB with Harmine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4033 and Psyr_4034 are separated by 258 nucleotides Psyr_4034 and Psyr_4035 are separated by 41 nucleotides
Psyr_4033: Psyr_4033 - YD repeat protein, at 4,804,230 to 4,807,049
_4033
Psyr_4034: Psyr_4034 - hypothetical protein, at 4,807,308 to 4,810,253
_4034
Psyr_4035: Psyr_4035 - insecticidal toxin protein, putative, at 4,810,295 to 4,815,148
_4035
Position (kb) 4807
4808
4809
4810
4811 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4806.349 kb on + strand, within Psyr_4033 at 4806.544 kb on + strand, within Psyr_4033 at 4806.631 kb on + strand, within Psyr_4033 at 4806.631 kb on + strand, within Psyr_4033 at 4806.632 kb on - strand, within Psyr_4033 at 4806.632 kb on - strand, within Psyr_4033 at 4806.632 kb on - strand, within Psyr_4033 at 4806.856 kb on + strand at 4806.856 kb on + strand at 4806.856 kb on + strand at 4806.857 kb on - strand at 4806.857 kb on - strand at 4806.919 kb on + strand at 4806.919 kb on + strand at 4807.025 kb on + strand at 4807.062 kb on + strand at 4807.073 kb on - strand at 4807.091 kb on + strand at 4807.170 kb on - strand at 4807.171 kb on + strand at 4807.171 kb on + strand at 4807.171 kb on + strand at 4807.204 kb on + strand at 4807.205 kb on - strand at 4807.253 kb on + strand at 4807.272 kb on - strand at 4807.334 kb on - strand at 4807.441 kb on + strand at 4807.481 kb on + strand at 4807.481 kb on + strand at 4807.481 kb on + strand at 4807.481 kb on + strand at 4807.481 kb on + strand at 4807.482 kb on - strand at 4807.482 kb on - strand at 4807.482 kb on - strand at 4807.622 kb on - strand, within Psyr_4034 at 4807.622 kb on - strand, within Psyr_4034 at 4807.690 kb on + strand, within Psyr_4034 at 4807.716 kb on + strand, within Psyr_4034 at 4807.717 kb on - strand, within Psyr_4034 at 4807.856 kb on + strand, within Psyr_4034 at 4807.856 kb on + strand, within Psyr_4034 at 4807.857 kb on - strand, within Psyr_4034 at 4807.882 kb on + strand, within Psyr_4034 at 4807.882 kb on + strand, within Psyr_4034 at 4807.882 kb on + strand, within Psyr_4034 at 4807.883 kb on - strand, within Psyr_4034 at 4807.883 kb on - strand, within Psyr_4034 at 4807.883 kb on - strand, within Psyr_4034 at 4807.883 kb on - strand, within Psyr_4034 at 4807.886 kb on + strand, within Psyr_4034 at 4807.886 kb on + strand, within Psyr_4034 at 4807.886 kb on + strand, within Psyr_4034 at 4807.886 kb on + strand, within Psyr_4034 at 4807.886 kb on + strand, within Psyr_4034 at 4807.886 kb on + strand, within Psyr_4034 at 4807.887 kb on - strand, within Psyr_4034 at 4807.887 kb on - strand, within Psyr_4034 at 4807.902 kb on + strand, within Psyr_4034 at 4807.902 kb on + strand, within Psyr_4034 at 4807.902 kb on + strand, within Psyr_4034 at 4807.902 kb on + strand, within Psyr_4034 at 4807.902 kb on + strand, within Psyr_4034 at 4807.937 kb on + strand, within Psyr_4034 at 4807.937 kb on + strand, within Psyr_4034 at 4807.937 kb on + strand, within Psyr_4034 at 4807.938 kb on - strand, within Psyr_4034 at 4807.938 kb on - strand, within Psyr_4034 at 4808.039 kb on - strand, within Psyr_4034 at 4808.052 kb on + strand, within Psyr_4034 at 4808.052 kb on + strand, within Psyr_4034 at 4808.053 kb on - strand, within Psyr_4034 at 4808.053 kb on - strand, within Psyr_4034 at 4808.253 kb on + strand, within Psyr_4034 at 4808.254 kb on - strand, within Psyr_4034 at 4808.254 kb on - strand, within Psyr_4034 at 4808.254 kb on - strand, within Psyr_4034 at 4808.254 kb on - strand, within Psyr_4034 at 4808.295 kb on - strand, within Psyr_4034 at 4808.376 kb on + strand, within Psyr_4034 at 4808.376 kb on + strand, within Psyr_4034 at 4808.376 kb on + strand, within Psyr_4034 at 4808.376 kb on + strand, within Psyr_4034 at 4808.376 kb on + strand, within Psyr_4034 at 4808.377 kb on - strand, within Psyr_4034 at 4808.476 kb on - strand, within Psyr_4034 at 4808.618 kb on + strand, within Psyr_4034 at 4808.693 kb on - strand, within Psyr_4034 at 4808.693 kb on - strand, within Psyr_4034 at 4808.696 kb on + strand, within Psyr_4034 at 4808.696 kb on + strand, within Psyr_4034 at 4808.697 kb on - strand, within Psyr_4034 at 4808.697 kb on - strand, within Psyr_4034 at 4808.697 kb on - strand, within Psyr_4034 at 4808.697 kb on - strand, within Psyr_4034 at 4808.697 kb on - strand, within Psyr_4034 at 4808.697 kb on - strand, within Psyr_4034 at 4808.697 kb on - strand, within Psyr_4034 at 4808.724 kb on + strand, within Psyr_4034 at 4809.272 kb on - strand, within Psyr_4034 at 4809.295 kb on + strand, within Psyr_4034 at 4809.356 kb on - strand, within Psyr_4034 at 4809.356 kb on - strand, within Psyr_4034 at 4809.432 kb on - strand, within Psyr_4034 at 4809.596 kb on - strand, within Psyr_4034 at 4809.685 kb on + strand, within Psyr_4034 at 4809.685 kb on + strand, within Psyr_4034 at 4809.686 kb on - strand, within Psyr_4034 at 4809.830 kb on - strand, within Psyr_4034 at 4809.830 kb on - strand, within Psyr_4034 at 4809.894 kb on + strand, within Psyr_4034 at 4809.895 kb on - strand, within Psyr_4034 at 4809.895 kb on - strand, within Psyr_4034 at 4809.895 kb on - strand, within Psyr_4034 at 4809.895 kb on - strand, within Psyr_4034 at 4809.960 kb on + strand at 4809.960 kb on + strand at 4810.143 kb on - strand at 4810.143 kb on - strand at 4810.168 kb on + strand at 4810.168 kb on + strand at 4810.168 kb on + strand at 4810.168 kb on + strand at 4810.168 kb on + strand at 4810.169 kb on - strand at 4810.169 kb on - strand at 4810.169 kb on - strand at 4810.169 kb on - strand at 4810.169 kb on - strand at 4810.222 kb on + strand at 4810.352 kb on + strand at 4810.352 kb on + strand at 4810.355 kb on + strand at 4810.355 kb on + strand at 4810.356 kb on - strand at 4810.356 kb on - strand at 4810.356 kb on - strand at 4810.356 kb on - strand at 4810.356 kb on - strand at 4810.384 kb on + strand at 4810.385 kb on - strand at 4810.487 kb on + strand at 4810.487 kb on + strand at 4810.487 kb on + strand at 4810.487 kb on + strand at 4810.487 kb on + strand at 4810.487 kb on + strand at 4810.487 kb on + strand at 4810.487 kb on + strand at 4810.487 kb on + strand at 4810.487 kb on + strand at 4810.488 kb on - strand at 4810.488 kb on - strand at 4810.488 kb on - strand at 4810.488 kb on - strand at 4810.488 kb on - strand at 4810.488 kb on - strand at 4810.488 kb on - strand at 4810.488 kb on - strand at 4810.488 kb on - strand at 4810.636 kb on + strand at 4810.664 kb on + strand at 4810.665 kb on - strand at 4810.665 kb on - strand at 4810.768 kb on - strand at 4810.775 kb on + strand at 4810.775 kb on + strand at 4810.823 kb on + strand, within Psyr_4035 at 4810.824 kb on - strand, within Psyr_4035 at 4810.824 kb on - strand, within Psyr_4035 at 4810.824 kb on - strand, within Psyr_4035 at 4810.856 kb on + strand, within Psyr_4035 at 4810.857 kb on - strand, within Psyr_4035 at 4810.857 kb on - strand, within Psyr_4035 at 4810.857 kb on - strand, within Psyr_4035 at 4810.859 kb on + strand, within Psyr_4035 at 4810.860 kb on - strand, within Psyr_4035 at 4810.860 kb on - strand, within Psyr_4035 at 4810.860 kb on - strand, within Psyr_4035 at 4810.889 kb on - strand, within Psyr_4035 at 4810.889 kb on - strand, within Psyr_4035 at 4810.892 kb on + strand, within Psyr_4035 at 4810.892 kb on + strand, within Psyr_4035 at 4810.892 kb on + strand, within Psyr_4035 at 4810.892 kb on + strand, within Psyr_4035 at 4810.892 kb on + strand, within Psyr_4035 at 4810.893 kb on - strand, within Psyr_4035 at 4810.896 kb on - strand, within Psyr_4035 at 4810.896 kb on - strand, within Psyr_4035 at 4810.896 kb on - strand, within Psyr_4035 at 4810.928 kb on + strand, within Psyr_4035 at 4811.020 kb on + strand, within Psyr_4035 at 4811.020 kb on + strand, within Psyr_4035 at 4811.048 kb on + strand, within Psyr_4035 at 4811.049 kb on - strand, within Psyr_4035 at 4811.106 kb on + strand, within Psyr_4035 at 4811.128 kb on + strand, within Psyr_4035 at 4811.129 kb on - strand, within Psyr_4035 at 4811.129 kb on - strand, within Psyr_4035 at 4811.129 kb on - strand, within Psyr_4035 at 4811.155 kb on + strand, within Psyr_4035 at 4811.221 kb on - strand, within Psyr_4035 at 4811.227 kb on + strand, within Psyr_4035 at 4811.228 kb on - strand, within Psyr_4035
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmine 10 mM remove 4,806,349 + Psyr_4033 0.75 -0.4 4,806,544 + Psyr_4033 0.82 -1.5 4,806,631 + Psyr_4033 0.85 +1.2 4,806,631 + Psyr_4033 0.85 -0.0 4,806,632 - Psyr_4033 0.85 -1.4 4,806,632 - Psyr_4033 0.85 -0.3 4,806,632 - Psyr_4033 0.85 -0.0 4,806,856 + +0.6 4,806,856 + -2.1 4,806,856 + +0.2 4,806,857 - +0.2 4,806,857 - -0.0 4,806,919 + +0.6 4,806,919 + +0.3 4,807,025 + -0.2 4,807,062 + +0.6 4,807,073 - +0.6 4,807,091 + +0.6 4,807,170 - +1.1 4,807,171 + +1.2 4,807,171 + +0.4 4,807,171 + +0.9 4,807,204 + -2.7 4,807,205 - +1.5 4,807,253 + -0.9 4,807,272 - -1.1 4,807,334 - +0.9 4,807,441 + -2.0 4,807,481 + +0.4 4,807,481 + -1.2 4,807,481 + -0.8 4,807,481 + -1.5 4,807,481 + -1.7 4,807,482 - -2.0 4,807,482 - +0.7 4,807,482 - +0.3 4,807,622 - Psyr_4034 0.11 +1.2 4,807,622 - Psyr_4034 0.11 -0.1 4,807,690 + Psyr_4034 0.13 -0.2 4,807,716 + Psyr_4034 0.14 -0.0 4,807,717 - Psyr_4034 0.14 +0.4 4,807,856 + Psyr_4034 0.19 +0.1 4,807,856 + Psyr_4034 0.19 +0.3 4,807,857 - Psyr_4034 0.19 -0.4 4,807,882 + Psyr_4034 0.19 +0.5 4,807,882 + Psyr_4034 0.19 +0.8 4,807,882 + Psyr_4034 0.19 +0.8 4,807,883 - Psyr_4034 0.20 -0.3 4,807,883 - Psyr_4034 0.20 -0.4 4,807,883 - Psyr_4034 0.20 -0.6 4,807,883 - Psyr_4034 0.20 -1.2 4,807,886 + Psyr_4034 0.20 -1.1 4,807,886 + Psyr_4034 0.20 +1.6 4,807,886 + Psyr_4034 0.20 -0.1 4,807,886 + Psyr_4034 0.20 +0.6 4,807,886 + Psyr_4034 0.20 -0.9 4,807,886 + Psyr_4034 0.20 -1.9 4,807,887 - Psyr_4034 0.20 +0.4 4,807,887 - Psyr_4034 0.20 -0.0 4,807,902 + Psyr_4034 0.20 -0.6 4,807,902 + Psyr_4034 0.20 -1.4 4,807,902 + Psyr_4034 0.20 +0.4 4,807,902 + Psyr_4034 0.20 +1.1 4,807,902 + Psyr_4034 0.20 +1.5 4,807,937 + Psyr_4034 0.21 -0.7 4,807,937 + Psyr_4034 0.21 -2.7 4,807,937 + Psyr_4034 0.21 -0.4 4,807,938 - Psyr_4034 0.21 -0.7 4,807,938 - Psyr_4034 0.21 +0.7 4,808,039 - Psyr_4034 0.25 +0.4 4,808,052 + Psyr_4034 0.25 -0.7 4,808,052 + Psyr_4034 0.25 -0.7 4,808,053 - Psyr_4034 0.25 -0.0 4,808,053 - Psyr_4034 0.25 +0.2 4,808,253 + Psyr_4034 0.32 -0.8 4,808,254 - Psyr_4034 0.32 +0.1 4,808,254 - Psyr_4034 0.32 -0.9 4,808,254 - Psyr_4034 0.32 +0.5 4,808,254 - Psyr_4034 0.32 +1.1 4,808,295 - Psyr_4034 0.34 -0.1 4,808,376 + Psyr_4034 0.36 +1.3 4,808,376 + Psyr_4034 0.36 +0.5 4,808,376 + Psyr_4034 0.36 -1.0 4,808,376 + Psyr_4034 0.36 -0.3 4,808,376 + Psyr_4034 0.36 -2.1 4,808,377 - Psyr_4034 0.36 -1.7 4,808,476 - Psyr_4034 0.40 +0.2 4,808,618 + Psyr_4034 0.44 +1.0 4,808,693 - Psyr_4034 0.47 -0.3 4,808,693 - Psyr_4034 0.47 -0.0 4,808,696 + Psyr_4034 0.47 +0.6 4,808,696 + Psyr_4034 0.47 +0.8 4,808,697 - Psyr_4034 0.47 -0.1 4,808,697 - Psyr_4034 0.47 -0.5 4,808,697 - Psyr_4034 0.47 +0.4 4,808,697 - Psyr_4034 0.47 +0.2 4,808,697 - Psyr_4034 0.47 +0.6 4,808,697 - Psyr_4034 0.47 -0.4 4,808,697 - Psyr_4034 0.47 -0.8 4,808,724 + Psyr_4034 0.48 -0.5 4,809,272 - Psyr_4034 0.67 -1.2 4,809,295 + Psyr_4034 0.67 -0.2 4,809,356 - Psyr_4034 0.70 -1.2 4,809,356 - Psyr_4034 0.70 -1.6 4,809,432 - Psyr_4034 0.72 -0.0 4,809,596 - Psyr_4034 0.78 +1.3 4,809,685 + Psyr_4034 0.81 -0.5 4,809,685 + Psyr_4034 0.81 +0.1 4,809,686 - Psyr_4034 0.81 +0.8 4,809,830 - Psyr_4034 0.86 -0.1 4,809,830 - Psyr_4034 0.86 -0.3 4,809,894 + Psyr_4034 0.88 +0.3 4,809,895 - Psyr_4034 0.88 +0.4 4,809,895 - Psyr_4034 0.88 +0.2 4,809,895 - Psyr_4034 0.88 -0.2 4,809,895 - Psyr_4034 0.88 +0.6 4,809,960 + +0.4 4,809,960 + +0.3 4,810,143 - +0.1 4,810,143 - +0.4 4,810,168 + -0.5 4,810,168 + -0.3 4,810,168 + -0.1 4,810,168 + -0.7 4,810,168 + +0.1 4,810,169 - +1.0 4,810,169 - +2.6 4,810,169 - -0.6 4,810,169 - +0.1 4,810,169 - -0.1 4,810,222 + +0.2 4,810,352 + +0.4 4,810,352 + -2.6 4,810,355 + +0.2 4,810,355 + -1.5 4,810,356 - -0.6 4,810,356 - -0.2 4,810,356 - -0.3 4,810,356 - +0.9 4,810,356 - -1.4 4,810,384 + -1.3 4,810,385 - -0.7 4,810,487 + -0.7 4,810,487 + -1.0 4,810,487 + +0.6 4,810,487 + -0.6 4,810,487 + -0.2 4,810,487 + +0.6 4,810,487 + -0.2 4,810,487 + -0.3 4,810,487 + +0.4 4,810,487 + +1.2 4,810,488 - -0.1 4,810,488 - -0.3 4,810,488 - +1.0 4,810,488 - +0.2 4,810,488 - -1.4 4,810,488 - -1.0 4,810,488 - +0.4 4,810,488 - +0.4 4,810,488 - +0.6 4,810,636 + +0.4 4,810,664 + -0.3 4,810,665 - -0.2 4,810,665 - -1.2 4,810,768 - -1.4 4,810,775 + -0.3 4,810,775 + -0.6 4,810,823 + Psyr_4035 0.11 +0.4 4,810,824 - Psyr_4035 0.11 +0.9 4,810,824 - Psyr_4035 0.11 -0.7 4,810,824 - Psyr_4035 0.11 +0.3 4,810,856 + Psyr_4035 0.12 -1.2 4,810,857 - Psyr_4035 0.12 +1.0 4,810,857 - Psyr_4035 0.12 +0.2 4,810,857 - Psyr_4035 0.12 -0.3 4,810,859 + Psyr_4035 0.12 +0.3 4,810,860 - Psyr_4035 0.12 -0.5 4,810,860 - Psyr_4035 0.12 -1.9 4,810,860 - Psyr_4035 0.12 -0.2 4,810,889 - Psyr_4035 0.12 -0.6 4,810,889 - Psyr_4035 0.12 -0.6 4,810,892 + Psyr_4035 0.12 -0.3 4,810,892 + Psyr_4035 0.12 -0.1 4,810,892 + Psyr_4035 0.12 -0.0 4,810,892 + Psyr_4035 0.12 +0.5 4,810,892 + Psyr_4035 0.12 +0.2 4,810,893 - Psyr_4035 0.12 -0.2 4,810,896 - Psyr_4035 0.12 +0.7 4,810,896 - Psyr_4035 0.12 -0.5 4,810,896 - Psyr_4035 0.12 -1.1 4,810,928 + Psyr_4035 0.13 +1.0 4,811,020 + Psyr_4035 0.15 +1.6 4,811,020 + Psyr_4035 0.15 -0.3 4,811,048 + Psyr_4035 0.16 -0.4 4,811,049 - Psyr_4035 0.16 +0.7 4,811,106 + Psyr_4035 0.17 -0.2 4,811,128 + Psyr_4035 0.17 +0.3 4,811,129 - Psyr_4035 0.17 -0.6 4,811,129 - Psyr_4035 0.17 +0.1 4,811,129 - Psyr_4035 0.17 +0.2 4,811,155 + Psyr_4035 0.18 -2.2 4,811,221 - Psyr_4035 0.19 -1.4 4,811,227 + Psyr_4035 0.19 +0.3 4,811,228 - Psyr_4035 0.19 -0.1
Or see this region's nucleotide sequence