Experiment: KB with Harmine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3936 and Psyr_3937 are separated by 27 nucleotides Psyr_3937 and Psyr_3938 are separated by 76 nucleotides
Psyr_3936: Psyr_3936 - General substrate transporter:Major facilitator superfamily, at 4,680,987 to 4,682,327
_3936
Psyr_3937: Psyr_3937 - Polysaccharide deacetylase, at 4,682,355 to 4,683,236
_3937
Psyr_3938: Psyr_3938 - Amidase, at 4,683,313 to 4,684,686
_3938
Position (kb) 4682
4683
4684 Strain fitness (log2 ratio) -2
-1
0
1 at 4681.394 kb on - strand, within Psyr_3936 at 4681.855 kb on + strand, within Psyr_3936 at 4681.856 kb on - strand, within Psyr_3936 at 4681.856 kb on - strand, within Psyr_3936 at 4681.856 kb on - strand, within Psyr_3936 at 4681.903 kb on + strand, within Psyr_3936 at 4681.903 kb on + strand, within Psyr_3936 at 4681.904 kb on - strand, within Psyr_3936 at 4681.904 kb on - strand, within Psyr_3936 at 4681.919 kb on - strand, within Psyr_3936 at 4681.919 kb on - strand, within Psyr_3936 at 4681.919 kb on - strand, within Psyr_3936 at 4681.919 kb on - strand, within Psyr_3936 at 4682.215 kb on + strand at 4682.215 kb on + strand at 4682.216 kb on - strand at 4682.216 kb on - strand at 4682.216 kb on - strand at 4682.216 kb on - strand at 4682.216 kb on - strand at 4682.216 kb on - strand at 4682.216 kb on - strand at 4682.262 kb on + strand at 4682.262 kb on + strand at 4682.312 kb on + strand at 4682.313 kb on - strand at 4682.313 kb on - strand at 4682.313 kb on - strand at 4682.313 kb on - strand at 4682.317 kb on + strand at 4682.318 kb on - strand at 4682.318 kb on - strand at 4682.318 kb on - strand at 4682.318 kb on - strand at 4682.728 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.765 kb on - strand, within Psyr_3937 at 4682.765 kb on - strand, within Psyr_3937 at 4682.765 kb on - strand, within Psyr_3937 at 4682.765 kb on - strand, within Psyr_3937 at 4682.767 kb on + strand, within Psyr_3937 at 4682.803 kb on + strand, within Psyr_3937 at 4682.803 kb on + strand, within Psyr_3937 at 4682.803 kb on + strand, within Psyr_3937 at 4682.804 kb on - strand, within Psyr_3937 at 4682.804 kb on - strand, within Psyr_3937 at 4682.804 kb on - strand, within Psyr_3937 at 4682.869 kb on + strand, within Psyr_3937 at 4682.870 kb on - strand, within Psyr_3937 at 4683.066 kb on - strand, within Psyr_3937 at 4683.169 kb on + strand at 4683.169 kb on + strand at 4683.170 kb on - strand at 4683.326 kb on - strand at 4683.630 kb on - strand, within Psyr_3938 at 4683.630 kb on - strand, within Psyr_3938 at 4684.137 kb on + strand, within Psyr_3938 at 4684.138 kb on - strand, within Psyr_3938
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmine 10 mM remove 4,681,394 - Psyr_3936 0.30 -1.7 4,681,855 + Psyr_3936 0.65 -0.8 4,681,856 - Psyr_3936 0.65 +0.4 4,681,856 - Psyr_3936 0.65 +0.3 4,681,856 - Psyr_3936 0.65 +0.0 4,681,903 + Psyr_3936 0.68 -0.9 4,681,903 + Psyr_3936 0.68 -0.1 4,681,904 - Psyr_3936 0.68 -0.4 4,681,904 - Psyr_3936 0.68 -0.8 4,681,919 - Psyr_3936 0.70 +0.5 4,681,919 - Psyr_3936 0.70 +0.4 4,681,919 - Psyr_3936 0.70 +0.4 4,681,919 - Psyr_3936 0.70 +0.9 4,682,215 + -0.1 4,682,215 + +1.6 4,682,216 - +0.5 4,682,216 - +1.4 4,682,216 - -0.8 4,682,216 - +0.2 4,682,216 - +1.0 4,682,216 - +1.2 4,682,216 - -0.9 4,682,262 + -0.3 4,682,262 + -1.3 4,682,312 + -0.1 4,682,313 - -1.1 4,682,313 - +0.7 4,682,313 - +0.7 4,682,313 - -0.3 4,682,317 + +0.9 4,682,318 - +0.8 4,682,318 - -0.8 4,682,318 - +0.9 4,682,318 - +0.9 4,682,728 + Psyr_3937 0.42 -1.3 4,682,764 + Psyr_3937 0.46 +0.1 4,682,764 + Psyr_3937 0.46 -0.5 4,682,764 + Psyr_3937 0.46 +0.5 4,682,764 + Psyr_3937 0.46 -1.1 4,682,764 + Psyr_3937 0.46 -1.7 4,682,764 + Psyr_3937 0.46 -1.6 4,682,764 + Psyr_3937 0.46 -0.2 4,682,764 + Psyr_3937 0.46 -1.0 4,682,764 + Psyr_3937 0.46 -1.5 4,682,765 - Psyr_3937 0.46 +1.1 4,682,765 - Psyr_3937 0.46 -0.0 4,682,765 - Psyr_3937 0.46 +1.2 4,682,765 - Psyr_3937 0.46 -1.5 4,682,767 + Psyr_3937 0.47 +0.8 4,682,803 + Psyr_3937 0.51 -1.5 4,682,803 + Psyr_3937 0.51 -0.4 4,682,803 + Psyr_3937 0.51 -0.5 4,682,804 - Psyr_3937 0.51 +0.4 4,682,804 - Psyr_3937 0.51 -0.8 4,682,804 - Psyr_3937 0.51 +1.7 4,682,869 + Psyr_3937 0.58 -0.5 4,682,870 - Psyr_3937 0.58 -0.5 4,683,066 - Psyr_3937 0.81 -2.4 4,683,169 + +0.3 4,683,169 + +0.2 4,683,170 - -1.1 4,683,326 - -0.8 4,683,630 - Psyr_3938 0.23 +0.5 4,683,630 - Psyr_3938 0.23 -1.0 4,684,137 + Psyr_3938 0.60 -1.2 4,684,138 - Psyr_3938 0.60 -0.1
Or see this region's nucleotide sequence