Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3903

Experiment: KB with Harmine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3902 and Psyr_3903 are separated by 8 nucleotidesPsyr_3903 and Psyr_3904 are separated by 341 nucleotides Psyr_3902: Psyr_3902 - ABC transporter:TOBE, at 4,643,126 to 4,644,199 _3902 Psyr_3903: Psyr_3903 - Conserved hypothetical protein 11, at 4,644,208 to 4,644,678 _3903 Psyr_3904: Psyr_3904 - Major intrinsic protein, at 4,645,020 to 4,645,877 _3904 Position (kb) 4644 4645Strain fitness (log2 ratio) -2 -1 0 1 2at 4643.394 kb on - strand, within Psyr_3902at 4643.401 kb on - strand, within Psyr_3902at 4643.786 kb on + strand, within Psyr_3902at 4643.843 kb on + strand, within Psyr_3902at 4643.843 kb on + strand, within Psyr_3902at 4643.844 kb on - strand, within Psyr_3902at 4643.844 kb on - strand, within Psyr_3902at 4643.844 kb on - strand, within Psyr_3902at 4643.844 kb on - strand, within Psyr_3902at 4643.844 kb on - strand, within Psyr_3902at 4643.898 kb on + strand, within Psyr_3902at 4643.918 kb on + strand, within Psyr_3902at 4643.955 kb on + strand, within Psyr_3902at 4643.955 kb on + strand, within Psyr_3902at 4643.955 kb on + strand, within Psyr_3902at 4644.041 kb on + strand, within Psyr_3902at 4644.042 kb on - strand, within Psyr_3902at 4644.194 kb on - strandat 4644.244 kb on - strandat 4644.305 kb on + strand, within Psyr_3903at 4644.305 kb on + strand, within Psyr_3903at 4644.305 kb on + strand, within Psyr_3903at 4644.305 kb on + strand, within Psyr_3903at 4644.305 kb on + strand, within Psyr_3903at 4644.469 kb on + strand, within Psyr_3903at 4644.470 kb on - strand, within Psyr_3903at 4644.470 kb on - strand, within Psyr_3903at 4644.470 kb on - strand, within Psyr_3903at 4644.470 kb on - strand, within Psyr_3903at 4644.470 kb on - strand, within Psyr_3903at 4644.509 kb on - strand, within Psyr_3903at 4644.509 kb on - strand, within Psyr_3903at 4644.620 kb on + strand, within Psyr_3903at 4644.620 kb on + strand, within Psyr_3903at 4644.621 kb on - strand, within Psyr_3903at 4644.621 kb on - strand, within Psyr_3903at 4644.723 kb on + strandat 4644.797 kb on + strandat 4644.797 kb on + strandat 4644.797 kb on + strandat 4644.798 kb on - strandat 4644.915 kb on + strandat 4644.915 kb on + strandat 4644.915 kb on + strandat 4644.915 kb on + strandat 4644.915 kb on + strandat 4644.916 kb on - strandat 4644.916 kb on - strandat 4645.015 kb on + strandat 4645.033 kb on + strandat 4645.197 kb on + strand, within Psyr_3904at 4645.197 kb on + strand, within Psyr_3904at 4645.197 kb on + strand, within Psyr_3904at 4645.293 kb on + strand, within Psyr_3904at 4645.293 kb on + strand, within Psyr_3904at 4645.293 kb on + strand, within Psyr_3904at 4645.293 kb on + strand, within Psyr_3904at 4645.293 kb on + strand, within Psyr_3904at 4645.294 kb on - strand, within Psyr_3904at 4645.294 kb on - strand, within Psyr_3904at 4645.294 kb on - strand, within Psyr_3904at 4645.294 kb on - strand, within Psyr_3904at 4645.294 kb on - strand, within Psyr_3904at 4645.294 kb on - strand, within Psyr_3904at 4645.296 kb on - strand, within Psyr_3904at 4645.341 kb on + strand, within Psyr_3904at 4645.341 kb on + strand, within Psyr_3904at 4645.350 kb on + strand, within Psyr_3904at 4645.350 kb on + strand, within Psyr_3904at 4645.350 kb on + strand, within Psyr_3904at 4645.350 kb on + strand, within Psyr_3904at 4645.351 kb on - strand, within Psyr_3904at 4645.351 kb on - strand, within Psyr_3904at 4645.440 kb on + strand, within Psyr_3904

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmine 10 mM
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4,643,394 - Psyr_3902 0.25 -0.1
4,643,401 - Psyr_3902 0.26 -1.1
4,643,786 + Psyr_3902 0.61 +0.6
4,643,843 + Psyr_3902 0.67 -0.4
4,643,843 + Psyr_3902 0.67 +0.4
4,643,844 - Psyr_3902 0.67 -2.1
4,643,844 - Psyr_3902 0.67 -0.1
4,643,844 - Psyr_3902 0.67 -0.1
4,643,844 - Psyr_3902 0.67 +0.2
4,643,844 - Psyr_3902 0.67 -0.3
4,643,898 + Psyr_3902 0.72 +0.4
4,643,918 + Psyr_3902 0.74 -1.7
4,643,955 + Psyr_3902 0.77 -0.8
4,643,955 + Psyr_3902 0.77 +0.0
4,643,955 + Psyr_3902 0.77 +0.6
4,644,041 + Psyr_3902 0.85 -1.0
4,644,042 - Psyr_3902 0.85 -1.1
4,644,194 - +0.2
4,644,244 - -0.1
4,644,305 + Psyr_3903 0.21 -1.3
4,644,305 + Psyr_3903 0.21 -2.4
4,644,305 + Psyr_3903 0.21 -1.1
4,644,305 + Psyr_3903 0.21 +0.1
4,644,305 + Psyr_3903 0.21 -1.9
4,644,469 + Psyr_3903 0.55 +1.5
4,644,470 - Psyr_3903 0.56 -1.0
4,644,470 - Psyr_3903 0.56 -0.8
4,644,470 - Psyr_3903 0.56 -0.7
4,644,470 - Psyr_3903 0.56 -0.5
4,644,470 - Psyr_3903 0.56 +0.3
4,644,509 - Psyr_3903 0.64 -0.5
4,644,509 - Psyr_3903 0.64 -1.7
4,644,620 + Psyr_3903 0.87 +1.8
4,644,620 + Psyr_3903 0.87 -1.5
4,644,621 - Psyr_3903 0.88 -0.7
4,644,621 - Psyr_3903 0.88 +0.9
4,644,723 + +0.9
4,644,797 + +1.3
4,644,797 + +0.5
4,644,797 + +0.2
4,644,798 - -1.1
4,644,915 + -0.7
4,644,915 + +0.7
4,644,915 + -0.8
4,644,915 + +2.0
4,644,915 + +2.3
4,644,916 - -0.8
4,644,916 - -2.1
4,645,015 + -0.1
4,645,033 + +0.5
4,645,197 + Psyr_3904 0.21 -0.8
4,645,197 + Psyr_3904 0.21 +1.5
4,645,197 + Psyr_3904 0.21 -1.7
4,645,293 + Psyr_3904 0.32 -0.2
4,645,293 + Psyr_3904 0.32 +0.9
4,645,293 + Psyr_3904 0.32 +1.1
4,645,293 + Psyr_3904 0.32 -0.5
4,645,293 + Psyr_3904 0.32 -1.5
4,645,294 - Psyr_3904 0.32 -2.2
4,645,294 - Psyr_3904 0.32 -0.5
4,645,294 - Psyr_3904 0.32 -0.8
4,645,294 - Psyr_3904 0.32 +0.5
4,645,294 - Psyr_3904 0.32 +1.9
4,645,294 - Psyr_3904 0.32 +0.9
4,645,296 - Psyr_3904 0.32 -1.2
4,645,341 + Psyr_3904 0.37 +1.1
4,645,341 + Psyr_3904 0.37 -0.5
4,645,350 + Psyr_3904 0.38 -0.7
4,645,350 + Psyr_3904 0.38 -0.3
4,645,350 + Psyr_3904 0.38 -1.8
4,645,350 + Psyr_3904 0.38 +0.5
4,645,351 - Psyr_3904 0.39 +0.5
4,645,351 - Psyr_3904 0.39 -0.8
4,645,440 + Psyr_3904 0.49 -1.7

Or see this region's nucleotide sequence