Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3320

Experiment: KB with Harmine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3318 and Psyr_3319 are separated by 159 nucleotidesPsyr_3319 and Psyr_3320 are separated by 126 nucleotidesPsyr_3320 and Psyr_3321 are separated by 7 nucleotides Psyr_3318: Psyr_3318 - conserved hypothetical protein, at 3,969,899 to 3,971,116 _3318 Psyr_3319: Psyr_3319 - ThiJ/PfpI, at 3,971,276 to 3,971,959 _3319 Psyr_3320: Psyr_3320 - conserved hypothetical protein, at 3,972,086 to 3,972,235 _3320 Psyr_3321: Psyr_3321 - transcriptional regulator, LysR family, at 3,972,243 to 3,973,178 _3321 Position (kb) 3972 3973Strain fitness (log2 ratio) -3 -2 -1 0 1at 3971.177 kb on + strandat 3971.178 kb on - strandat 3971.247 kb on + strandat 3971.247 kb on + strandat 3971.248 kb on - strandat 3971.248 kb on - strandat 3971.694 kb on + strand, within Psyr_3319at 3971.695 kb on - strand, within Psyr_3319at 3971.799 kb on + strand, within Psyr_3319at 3971.844 kb on - strand, within Psyr_3319at 3971.875 kb on - strand, within Psyr_3319at 3971.875 kb on - strand, within Psyr_3319at 3972.020 kb on + strandat 3972.072 kb on + strandat 3972.835 kb on - strand, within Psyr_3321at 3972.850 kb on + strand, within Psyr_3321at 3973.052 kb on - strand, within Psyr_3321at 3973.114 kb on + strandat 3973.115 kb on - strandat 3973.115 kb on - strandat 3973.166 kb on + strandat 3973.166 kb on + strandat 3973.167 kb on - strandat 3973.172 kb on + strandat 3973.231 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmine 10 mM
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3,971,177 + -0.9
3,971,178 - +1.5
3,971,247 + +0.3
3,971,247 + -0.1
3,971,248 - -0.1
3,971,248 - -0.1
3,971,694 + Psyr_3319 0.61 +0.1
3,971,695 - Psyr_3319 0.61 -0.8
3,971,799 + Psyr_3319 0.76 +1.0
3,971,844 - Psyr_3319 0.83 -0.2
3,971,875 - Psyr_3319 0.88 +0.6
3,971,875 - Psyr_3319 0.88 -0.0
3,972,020 + -2.1
3,972,072 + -0.5
3,972,835 - Psyr_3321 0.63 +1.2
3,972,850 + Psyr_3321 0.65 +1.2
3,973,052 - Psyr_3321 0.86 -0.5
3,973,114 + -0.9
3,973,115 - -3.0
3,973,115 - -1.2
3,973,166 + +1.1
3,973,166 + -2.3
3,973,167 - -0.4
3,973,172 + -0.9
3,973,231 + -1.4

Or see this region's nucleotide sequence