Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1746

Experiment: KB with Harmine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1744 and Psyr_1745 are separated by 85 nucleotidesPsyr_1745 and Psyr_1746 are separated by 78 nucleotidesPsyr_1746 and Psyr_1747 are separated by 91 nucleotidesPsyr_1747 and Psyr_1748 are separated by 106 nucleotides Psyr_1744: Psyr_1744 - lipoprotein, putative, at 1,981,895 to 1,982,386 _1744 Psyr_1745: Psyr_1745 - hypothetical protein, at 1,982,472 to 1,983,302 _1745 Psyr_1746: Psyr_1746 - Trigger factor, at 1,983,381 to 1,984,691 _1746 Psyr_1747: Psyr_1747 - ATP-dependent Clp protease proteolytic subunit ClpP, at 1,984,783 to 1,985,424 _1747 Psyr_1748: Psyr_1748 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,985,531 to 1,986,814 _1748 Position (kb) 1983 1984 1985Strain fitness (log2 ratio) -2 -1 0 1 2at 1982.382 kb on + strandat 1982.382 kb on + strandat 1982.382 kb on + strandat 1982.383 kb on - strandat 1982.413 kb on + strandat 1982.413 kb on + strandat 1982.414 kb on - strandat 1982.438 kb on - strandat 1982.446 kb on + strandat 1982.529 kb on + strandat 1982.530 kb on - strandat 1982.530 kb on - strandat 1982.543 kb on + strandat 1982.544 kb on - strandat 1982.544 kb on - strandat 1982.551 kb on + strandat 1982.551 kb on + strandat 1982.551 kb on + strandat 1982.552 kb on - strandat 1982.552 kb on - strandat 1982.552 kb on - strandat 1982.552 kb on - strandat 1982.673 kb on - strand, within Psyr_1745at 1982.673 kb on - strand, within Psyr_1745at 1982.694 kb on - strand, within Psyr_1745at 1982.797 kb on - strand, within Psyr_1745at 1982.797 kb on - strand, within Psyr_1745at 1982.797 kb on - strand, within Psyr_1745at 1982.797 kb on - strand, within Psyr_1745at 1982.919 kb on + strand, within Psyr_1745at 1982.919 kb on + strand, within Psyr_1745at 1982.919 kb on + strand, within Psyr_1745at 1982.919 kb on + strand, within Psyr_1745at 1982.920 kb on - strand, within Psyr_1745at 1982.994 kb on + strand, within Psyr_1745at 1982.994 kb on + strand, within Psyr_1745at 1983.085 kb on - strand, within Psyr_1745at 1983.145 kb on + strand, within Psyr_1745at 1983.145 kb on + strand, within Psyr_1745at 1983.186 kb on + strand, within Psyr_1745at 1983.186 kb on + strand, within Psyr_1745at 1983.187 kb on - strand, within Psyr_1745at 1983.187 kb on - strand, within Psyr_1745at 1983.187 kb on - strand, within Psyr_1745at 1983.187 kb on - strand, within Psyr_1745at 1983.187 kb on - strand, within Psyr_1745at 1983.188 kb on + strand, within Psyr_1745at 1983.190 kb on + strand, within Psyr_1745at 1983.190 kb on + strand, within Psyr_1745at 1983.190 kb on + strand, within Psyr_1745at 1983.190 kb on + strand, within Psyr_1745at 1983.191 kb on - strand, within Psyr_1745at 1983.191 kb on - strand, within Psyr_1745at 1983.191 kb on - strand, within Psyr_1745at 1983.191 kb on - strand, within Psyr_1745at 1983.191 kb on - strand, within Psyr_1745at 1983.266 kb on + strandat 1983.268 kb on + strandat 1983.269 kb on - strandat 1983.305 kb on - strandat 1983.436 kb on + strandat 1983.437 kb on - strandat 1983.606 kb on + strand, within Psyr_1746at 1983.606 kb on + strand, within Psyr_1746at 1983.607 kb on - strand, within Psyr_1746at 1983.655 kb on + strand, within Psyr_1746at 1983.713 kb on - strand, within Psyr_1746at 1983.713 kb on - strand, within Psyr_1746at 1984.531 kb on + strand, within Psyr_1746at 1984.542 kb on + strand, within Psyr_1746at 1984.542 kb on + strand, within Psyr_1746at 1984.542 kb on + strand, within Psyr_1746at 1984.570 kb on + strandat 1984.570 kb on + strandat 1984.570 kb on + strandat 1984.570 kb on + strandat 1984.570 kb on + strandat 1984.570 kb on + strandat 1984.600 kb on + strandat 1984.600 kb on + strandat 1984.600 kb on + strandat 1984.600 kb on + strandat 1984.604 kb on + strandat 1984.604 kb on + strandat 1984.798 kb on + strandat 1984.882 kb on + strand, within Psyr_1747at 1984.891 kb on + strand, within Psyr_1747at 1984.891 kb on + strand, within Psyr_1747at 1984.891 kb on + strand, within Psyr_1747at 1984.892 kb on - strand, within Psyr_1747at 1984.892 kb on - strand, within Psyr_1747at 1984.945 kb on + strand, within Psyr_1747at 1984.945 kb on + strand, within Psyr_1747at 1984.945 kb on + strand, within Psyr_1747at 1984.945 kb on + strand, within Psyr_1747at 1984.945 kb on + strand, within Psyr_1747at 1984.946 kb on - strand, within Psyr_1747at 1984.946 kb on - strand, within Psyr_1747at 1984.946 kb on - strand, within Psyr_1747at 1985.017 kb on + strand, within Psyr_1747at 1985.017 kb on + strand, within Psyr_1747at 1985.018 kb on - strand, within Psyr_1747at 1985.062 kb on + strand, within Psyr_1747at 1985.639 kb on - strandat 1985.639 kb on - strandat 1985.639 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmine 10 mM
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1,982,382 + -0.4
1,982,382 + +1.7
1,982,382 + -0.3
1,982,383 - -0.6
1,982,413 + +0.5
1,982,413 + +1.0
1,982,414 - +0.2
1,982,438 - -1.6
1,982,446 + -0.9
1,982,529 + -0.8
1,982,530 - -0.0
1,982,530 - +2.0
1,982,543 + -0.5
1,982,544 - -0.5
1,982,544 - -1.5
1,982,551 + -0.1
1,982,551 + -0.0
1,982,551 + +0.2
1,982,552 - -0.7
1,982,552 - +0.5
1,982,552 - +1.5
1,982,552 - -0.1
1,982,673 - Psyr_1745 0.24 +0.1
1,982,673 - Psyr_1745 0.24 -0.4
1,982,694 - Psyr_1745 0.27 +1.1
1,982,797 - Psyr_1745 0.39 +0.6
1,982,797 - Psyr_1745 0.39 -0.6
1,982,797 - Psyr_1745 0.39 +0.2
1,982,797 - Psyr_1745 0.39 -0.1
1,982,919 + Psyr_1745 0.54 +2.6
1,982,919 + Psyr_1745 0.54 -0.5
1,982,919 + Psyr_1745 0.54 -0.6
1,982,919 + Psyr_1745 0.54 +0.9
1,982,920 - Psyr_1745 0.54 +0.7
1,982,994 + Psyr_1745 0.63 -0.1
1,982,994 + Psyr_1745 0.63 -1.3
1,983,085 - Psyr_1745 0.74 -1.2
1,983,145 + Psyr_1745 0.81 +0.8
1,983,145 + Psyr_1745 0.81 -1.9
1,983,186 + Psyr_1745 0.86 -0.0
1,983,186 + Psyr_1745 0.86 -0.9
1,983,187 - Psyr_1745 0.86 +0.1
1,983,187 - Psyr_1745 0.86 +1.8
1,983,187 - Psyr_1745 0.86 +0.0
1,983,187 - Psyr_1745 0.86 +1.9
1,983,187 - Psyr_1745 0.86 -0.1
1,983,188 + Psyr_1745 0.86 +0.8
1,983,190 + Psyr_1745 0.86 +2.3
1,983,190 + Psyr_1745 0.86 +1.5
1,983,190 + Psyr_1745 0.86 +0.1
1,983,190 + Psyr_1745 0.86 +0.2
1,983,191 - Psyr_1745 0.87 -0.5
1,983,191 - Psyr_1745 0.87 +0.4
1,983,191 - Psyr_1745 0.87 -2.7
1,983,191 - Psyr_1745 0.87 -0.4
1,983,191 - Psyr_1745 0.87 -1.9
1,983,266 + -0.6
1,983,268 + +0.4
1,983,269 - +0.5
1,983,305 - +2.0
1,983,436 + -0.4
1,983,437 - -0.1
1,983,606 + Psyr_1746 0.17 -1.3
1,983,606 + Psyr_1746 0.17 +0.7
1,983,607 - Psyr_1746 0.17 +0.0
1,983,655 + Psyr_1746 0.21 -0.3
1,983,713 - Psyr_1746 0.25 -0.1
1,983,713 - Psyr_1746 0.25 -1.3
1,984,531 + Psyr_1746 0.88 +0.7
1,984,542 + Psyr_1746 0.89 +0.1
1,984,542 + Psyr_1746 0.89 +1.2
1,984,542 + Psyr_1746 0.89 +0.7
1,984,570 + -0.8
1,984,570 + +1.1
1,984,570 + +0.7
1,984,570 + +0.9
1,984,570 + -0.9
1,984,570 + +0.1
1,984,600 + +0.9
1,984,600 + -0.7
1,984,600 + -0.2
1,984,600 + -0.7
1,984,604 + -0.2
1,984,604 + -1.8
1,984,798 + +1.9
1,984,882 + Psyr_1747 0.15 +0.1
1,984,891 + Psyr_1747 0.17 -0.9
1,984,891 + Psyr_1747 0.17 -1.5
1,984,891 + Psyr_1747 0.17 -0.5
1,984,892 - Psyr_1747 0.17 -1.1
1,984,892 - Psyr_1747 0.17 +0.5
1,984,945 + Psyr_1747 0.25 -1.6
1,984,945 + Psyr_1747 0.25 +0.5
1,984,945 + Psyr_1747 0.25 -0.9
1,984,945 + Psyr_1747 0.25 +1.2
1,984,945 + Psyr_1747 0.25 -2.3
1,984,946 - Psyr_1747 0.25 -0.8
1,984,946 - Psyr_1747 0.25 +1.5
1,984,946 - Psyr_1747 0.25 -1.9
1,985,017 + Psyr_1747 0.36 -2.1
1,985,017 + Psyr_1747 0.36 +1.5
1,985,018 - Psyr_1747 0.37 -1.3
1,985,062 + Psyr_1747 0.43 +0.0
1,985,639 - +1.5
1,985,639 - +1.5
1,985,639 - +1.0

Or see this region's nucleotide sequence