Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0808

Experiment: KB with Harmine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0806 and Psyr_0807 are separated by 0 nucleotidesPsyr_0807 and Psyr_0808 are separated by 46 nucleotidesPsyr_0808 and Psyr_0809 overlap by 4 nucleotides Psyr_0806: Psyr_0806 - conserved hypothetical protein, at 911,918 to 912,868 _0806 Psyr_0807: Psyr_0807 - HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2, at 912,869 to 913,615 _0807 Psyr_0808: Psyr_0808 - stress protein, at 913,662 to 914,255 _0808 Psyr_0809: Psyr_0809 - stress protein, at 914,252 to 915,421 _0809 Position (kb) 913 914 915Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 912.729 kb on - strand, within Psyr_0806at 912.729 kb on - strand, within Psyr_0806at 912.729 kb on - strand, within Psyr_0806at 912.729 kb on - strand, within Psyr_0806at 912.761 kb on + strand, within Psyr_0806at 912.762 kb on - strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.764 kb on - strand, within Psyr_0806at 912.764 kb on - strand, within Psyr_0806at 912.764 kb on - strand, within Psyr_0806at 912.764 kb on - strand, within Psyr_0806at 912.764 kb on - strand, within Psyr_0806at 912.862 kb on + strandat 912.862 kb on + strandat 912.862 kb on + strandat 912.862 kb on + strandat 912.863 kb on - strandat 912.863 kb on - strandat 912.863 kb on - strandat 912.863 kb on - strandat 912.866 kb on + strandat 912.866 kb on + strandat 912.866 kb on + strandat 912.866 kb on + strandat 912.866 kb on + strandat 912.866 kb on + strandat 912.873 kb on + strandat 912.873 kb on + strandat 912.873 kb on + strandat 912.873 kb on + strandat 912.873 kb on + strandat 912.873 kb on + strandat 913.288 kb on + strand, within Psyr_0807at 913.555 kb on + strandat 913.555 kb on + strandat 913.578 kb on + strandat 913.716 kb on - strandat 913.995 kb on + strand, within Psyr_0808at 913.995 kb on + strand, within Psyr_0808at 913.995 kb on + strand, within Psyr_0808at 913.995 kb on + strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 914.056 kb on - strand, within Psyr_0808at 914.064 kb on - strand, within Psyr_0808at 914.146 kb on - strand, within Psyr_0808at 914.243 kb on + strandat 914.244 kb on - strandat 914.246 kb on - strandat 914.251 kb on + strandat 914.251 kb on + strandat 914.252 kb on - strandat 914.314 kb on + strandat 914.315 kb on - strandat 914.318 kb on + strandat 914.318 kb on + strandat 914.319 kb on - strandat 914.343 kb on + strandat 914.344 kb on - strandat 914.408 kb on + strand, within Psyr_0809at 914.409 kb on - strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.947 kb on + strand, within Psyr_0809at 914.947 kb on + strand, within Psyr_0809at 914.959 kb on + strand, within Psyr_0809at 914.960 kb on - strand, within Psyr_0809at 914.960 kb on - strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 915.092 kb on - strand, within Psyr_0809at 915.124 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmine 10 mM
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912,729 - Psyr_0806 0.85 -1.5
912,729 - Psyr_0806 0.85 -1.5
912,729 - Psyr_0806 0.85 -2.9
912,729 - Psyr_0806 0.85 -0.1
912,761 + Psyr_0806 0.89 +0.2
912,762 - Psyr_0806 0.89 -0.3
912,763 + Psyr_0806 0.89 -0.8
912,763 + Psyr_0806 0.89 +1.5
912,763 + Psyr_0806 0.89 +0.7
912,763 + Psyr_0806 0.89 -0.9
912,763 + Psyr_0806 0.89 -1.3
912,763 + Psyr_0806 0.89 -0.7
912,763 + Psyr_0806 0.89 -0.1
912,763 + Psyr_0806 0.89 +0.4
912,763 + Psyr_0806 0.89 +0.0
912,763 + Psyr_0806 0.89 +0.0
912,763 + Psyr_0806 0.89 +0.1
912,763 + Psyr_0806 0.89 +0.0
912,764 - Psyr_0806 0.89 -0.8
912,764 - Psyr_0806 0.89 -1.5
912,764 - Psyr_0806 0.89 -0.8
912,764 - Psyr_0806 0.89 -1.8
912,764 - Psyr_0806 0.89 -1.1
912,862 + -0.4
912,862 + +0.4
912,862 + +0.1
912,862 + -0.4
912,863 - -0.9
912,863 - -1.1
912,863 - +0.3
912,863 - -2.0
912,866 + -2.6
912,866 + +0.7
912,866 + +1.2
912,866 + -0.8
912,866 + +2.7
912,866 + -0.4
912,873 + -2.5
912,873 + -0.8
912,873 + +0.9
912,873 + -0.2
912,873 + +0.0
912,873 + -1.1
913,288 + Psyr_0807 0.56 -2.0
913,555 + -1.8
913,555 + -1.2
913,578 + -1.2
913,716 - -0.0
913,995 + Psyr_0808 0.56 -0.4
913,995 + Psyr_0808 0.56 +0.4
913,995 + Psyr_0808 0.56 -0.0
913,995 + Psyr_0808 0.56 -0.4
913,996 - Psyr_0808 0.56 -1.1
914,056 - Psyr_0808 0.66 -3.6
914,064 - Psyr_0808 0.68 -0.7
914,146 - Psyr_0808 0.81 -1.5
914,243 + -1.3
914,244 - -0.5
914,246 - -0.6
914,251 + -0.8
914,251 + +1.0
914,252 - +1.0
914,314 + +1.9
914,315 - -2.4
914,318 + -1.7
914,318 + +0.8
914,319 - -0.9
914,343 + -0.5
914,344 - +0.8
914,408 + Psyr_0809 0.13 +0.2
914,409 - Psyr_0809 0.13 -1.4
914,537 + Psyr_0809 0.24 -0.0
914,537 + Psyr_0809 0.24 +1.0
914,537 + Psyr_0809 0.24 -0.2
914,537 + Psyr_0809 0.24 -0.6
914,537 + Psyr_0809 0.24 +0.9
914,537 + Psyr_0809 0.24 -0.7
914,537 + Psyr_0809 0.24 +0.4
914,538 - Psyr_0809 0.24 -2.5
914,538 - Psyr_0809 0.24 -0.2
914,538 - Psyr_0809 0.24 -0.1
914,538 - Psyr_0809 0.24 +0.1
914,538 - Psyr_0809 0.24 +0.3
914,538 - Psyr_0809 0.24 -2.3
914,538 - Psyr_0809 0.24 -1.0
914,538 - Psyr_0809 0.24 +1.2
914,538 - Psyr_0809 0.24 -0.2
914,538 - Psyr_0809 0.24 +0.3
914,658 - Psyr_0809 0.35 +0.3
914,658 - Psyr_0809 0.35 +0.5
914,658 - Psyr_0809 0.35 +0.2
914,658 - Psyr_0809 0.35 +0.2
914,658 - Psyr_0809 0.35 -2.0
914,658 - Psyr_0809 0.35 -1.5
914,658 - Psyr_0809 0.35 +0.3
914,947 + Psyr_0809 0.59 -2.2
914,947 + Psyr_0809 0.59 +0.5
914,959 + Psyr_0809 0.60 -0.5
914,960 - Psyr_0809 0.61 -0.6
914,960 - Psyr_0809 0.61 -1.1
914,979 + Psyr_0809 0.62 -0.4
914,979 + Psyr_0809 0.62 -0.1
914,979 + Psyr_0809 0.62 +0.6
914,979 + Psyr_0809 0.62 -0.8
914,979 + Psyr_0809 0.62 -2.2
914,980 - Psyr_0809 0.62 +1.2
914,980 - Psyr_0809 0.62 -0.8
914,980 - Psyr_0809 0.62 +0.6
914,980 - Psyr_0809 0.62 +0.4
915,092 - Psyr_0809 0.72 +0.4
915,124 + Psyr_0809 0.75 +0.8
915,179 + Psyr_0809 0.79 +0.6
915,179 + Psyr_0809 0.79 -1.1
915,179 + Psyr_0809 0.79 +1.2
915,179 + Psyr_0809 0.79 -0.4
915,179 + Psyr_0809 0.79 -0.7
915,179 + Psyr_0809 0.79 -1.3
915,179 + Psyr_0809 0.79 -1.5
915,180 - Psyr_0809 0.79 +0.9
915,180 - Psyr_0809 0.79 -0.0
915,180 - Psyr_0809 0.79 +1.7
915,180 - Psyr_0809 0.79 -1.1
915,180 - Psyr_0809 0.79 -1.0
915,180 - Psyr_0809 0.79 +1.3
915,180 - Psyr_0809 0.79 -0.2
915,180 - Psyr_0809 0.79 +0.3
915,180 - Psyr_0809 0.79 -0.8
915,180 - Psyr_0809 0.79 +0.2
915,180 - Psyr_0809 0.79 -0.1
915,180 - Psyr_0809 0.79 -0.7
915,180 - Psyr_0809 0.79 +0.4
915,180 - Psyr_0809 0.79 +0.2
915,180 - Psyr_0809 0.79 +1.7
915,180 - Psyr_0809 0.79 -1.2
915,180 - Psyr_0809 0.79 +0.7
915,180 - Psyr_0809 0.79 -0.4

Or see this region's nucleotide sequence