Strain Fitness in Escherichia coli BW25113 around b1117

Experiment: Trimethoprim 0.00125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlolC and ycfV overlap by 8 nucleotidesycfV and lolE overlap by 1 nucleotides b1116: lolC - outer membrane-specific lipoprotein transporter subunit (NCBI), at 1,174,650 to 1,175,849 lolC b1117: ycfV - putative ATP-binding component of a transport system (VIMSS), at 1,175,842 to 1,176,543 ycfV b1118: lolE - outer membrane-specific lipoprotein transporter subunit (NCBI), at 1,176,543 to 1,177,787 lolE Position (kb) 1175 1176 1177Strain fitness (log2 ratio) -1 0 1at 1176.533 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trimethoprim 0.00125 mM
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1,176,533 + +0.6

Or see this region's nucleotide sequence