Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5210 and PP_5211 are separated by 84 nucleotides PP_5211 and PP_5212 are separated by 339 nucleotides PP_5212 and PP_5213 overlap by 1 nucleotides
PP_5210: PP_5210 - Alcohol dehydrogenase, zinc-containing, at 5,942,615 to 5,943,592
_5210
PP_5211: PP_5211 - ChaC-related protein, at 5,943,677 to 5,944,234
_5211
PP_5212: PP_5212 - Oxidoreductase, iron-sulfur-binding, at 5,944,574 to 5,945,542
_5212
PP_5213: PP_5213 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 5,945,542 to 5,947,008
_5213
Position (kb) 5944
5945
5946 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5943.649 kb on + strand at 5943.774 kb on + strand, within PP_5211 at 5943.774 kb on + strand, within PP_5211 at 5943.775 kb on - strand, within PP_5211 at 5943.853 kb on - strand, within PP_5211 at 5943.853 kb on - strand, within PP_5211 at 5944.101 kb on + strand, within PP_5211 at 5944.101 kb on + strand, within PP_5211 at 5944.102 kb on - strand, within PP_5211 at 5944.102 kb on - strand, within PP_5211 at 5944.124 kb on + strand, within PP_5211 at 5944.182 kb on + strand at 5944.258 kb on + strand at 5944.258 kb on + strand at 5944.309 kb on + strand at 5944.310 kb on - strand at 5944.327 kb on + strand at 5944.328 kb on - strand at 5944.328 kb on - strand at 5944.341 kb on + strand at 5944.354 kb on + strand at 5944.354 kb on + strand at 5944.355 kb on - strand at 5944.355 kb on - strand at 5944.363 kb on - strand at 5944.377 kb on - strand at 5944.400 kb on - strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.423 kb on + strand at 5944.424 kb on - strand at 5944.424 kb on - strand at 5944.424 kb on - strand at 5944.424 kb on - strand at 5944.424 kb on - strand at 5944.443 kb on - strand at 5944.493 kb on + strand at 5944.494 kb on - strand at 5944.494 kb on - strand at 5944.517 kb on + strand at 5944.539 kb on + strand at 5944.547 kb on + strand at 5944.549 kb on + strand at 5944.549 kb on + strand at 5944.549 kb on + strand at 5944.576 kb on - strand at 5944.576 kb on - strand at 5944.659 kb on + strand at 5944.659 kb on + strand at 5944.659 kb on + strand at 5944.659 kb on + strand at 5944.660 kb on - strand at 5944.660 kb on - strand at 5944.660 kb on - strand at 5944.660 kb on - strand at 5944.660 kb on - strand at 5944.660 kb on - strand at 5944.660 kb on - strand at 5944.660 kb on - strand at 5944.686 kb on + strand, within PP_5212 at 5944.687 kb on - strand, within PP_5212 at 5944.687 kb on - strand, within PP_5212 at 5944.699 kb on + strand, within PP_5212 at 5944.699 kb on + strand, within PP_5212 at 5944.699 kb on + strand, within PP_5212 at 5944.700 kb on - strand, within PP_5212 at 5944.700 kb on - strand, within PP_5212 at 5944.700 kb on - strand, within PP_5212 at 5944.700 kb on - strand, within PP_5212 at 5944.829 kb on + strand, within PP_5212 at 5944.829 kb on + strand, within PP_5212 at 5944.830 kb on - strand, within PP_5212 at 5944.830 kb on - strand, within PP_5212 at 5944.836 kb on + strand, within PP_5212 at 5944.837 kb on - strand, within PP_5212 at 5944.866 kb on + strand, within PP_5212 at 5944.866 kb on + strand, within PP_5212 at 5945.008 kb on - strand, within PP_5212 at 5945.163 kb on + strand, within PP_5212 at 5945.163 kb on + strand, within PP_5212 at 5945.163 kb on + strand, within PP_5212 at 5945.164 kb on - strand, within PP_5212 at 5945.457 kb on + strand at 5945.457 kb on + strand at 5945.458 kb on - strand at 5945.549 kb on - strand at 5945.549 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 5,943,649 + +0.0 5,943,774 + PP_5211 0.17 -0.3 5,943,774 + PP_5211 0.17 -0.0 5,943,775 - PP_5211 0.18 -0.3 5,943,853 - PP_5211 0.32 +0.1 5,943,853 - PP_5211 0.32 +0.4 5,944,101 + PP_5211 0.76 -0.3 5,944,101 + PP_5211 0.76 -0.5 5,944,102 - PP_5211 0.76 -0.9 5,944,102 - PP_5211 0.76 +0.4 5,944,124 + PP_5211 0.80 +0.3 5,944,182 + +0.0 5,944,258 + -0.9 5,944,258 + +0.3 5,944,309 + +0.3 5,944,310 - +0.0 5,944,327 + -0.1 5,944,328 - +0.5 5,944,328 - +0.0 5,944,341 + +0.1 5,944,354 + -1.8 5,944,354 + +0.4 5,944,355 - -0.0 5,944,355 - +0.5 5,944,363 - +0.3 5,944,377 - -0.1 5,944,400 - +0.4 5,944,423 + -0.5 5,944,423 + +0.2 5,944,423 + +1.5 5,944,423 + +0.4 5,944,423 + -0.5 5,944,423 + +0.2 5,944,423 + +0.0 5,944,424 - +0.3 5,944,424 - +0.4 5,944,424 - +0.5 5,944,424 - +0.5 5,944,424 - +0.6 5,944,443 - +0.0 5,944,493 + +0.4 5,944,494 - +0.2 5,944,494 - +0.0 5,944,517 + -1.2 5,944,539 + -0.0 5,944,547 + +0.2 5,944,549 + -0.7 5,944,549 + +0.2 5,944,549 + +0.9 5,944,576 - +0.6 5,944,576 - -0.4 5,944,659 + -0.5 5,944,659 + -1.3 5,944,659 + -0.1 5,944,659 + +0.5 5,944,660 - -0.4 5,944,660 - -1.1 5,944,660 - +1.9 5,944,660 - +1.8 5,944,660 - -0.7 5,944,660 - -0.7 5,944,660 - -0.3 5,944,660 - -1.0 5,944,686 + PP_5212 0.12 -0.2 5,944,687 - PP_5212 0.12 +0.5 5,944,687 - PP_5212 0.12 +0.8 5,944,699 + PP_5212 0.13 -0.8 5,944,699 + PP_5212 0.13 +0.6 5,944,699 + PP_5212 0.13 -0.0 5,944,700 - PP_5212 0.13 +0.3 5,944,700 - PP_5212 0.13 +1.8 5,944,700 - PP_5212 0.13 -0.2 5,944,700 - PP_5212 0.13 -0.1 5,944,829 + PP_5212 0.26 +1.6 5,944,829 + PP_5212 0.26 +0.9 5,944,830 - PP_5212 0.26 -1.1 5,944,830 - PP_5212 0.26 +1.8 5,944,836 + PP_5212 0.27 +0.9 5,944,837 - PP_5212 0.27 +0.3 5,944,866 + PP_5212 0.30 -0.1 5,944,866 + PP_5212 0.30 +0.3 5,945,008 - PP_5212 0.45 -0.1 5,945,163 + PP_5212 0.61 +0.2 5,945,163 + PP_5212 0.61 +1.9 5,945,163 + PP_5212 0.61 +0.5 5,945,164 - PP_5212 0.61 -0.1 5,945,457 + +1.1 5,945,457 + +0.4 5,945,458 - +0.5 5,945,549 - -0.5 5,945,549 - +0.4
Or see this region's nucleotide sequence