Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4829 and PP_4830 are separated by 243 nucleotides PP_4830 and PP_4831 overlap by 8 nucleotides
PP_4829: PP_4829 - putative precorrin-3B synthase, at 5,495,353 to 5,496,684
_4829
PP_4830: PP_4830 - precorrin-6Y C(5,15)-methyltransferase, at 5,496,928 to 5,498,139
_4830
PP_4831: PP_4831 - putative cobalt-precorrin-6A synthase, at 5,498,132 to 5,499,226
_4831
Position (kb) 5496
5497
5498
5499 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5495.996 kb on + strand, within PP_4829 at 5495.996 kb on + strand, within PP_4829 at 5496.583 kb on - strand at 5496.583 kb on - strand at 5496.707 kb on + strand at 5496.708 kb on - strand at 5496.708 kb on - strand at 5496.722 kb on + strand at 5496.722 kb on + strand at 5496.722 kb on + strand at 5496.723 kb on - strand at 5496.723 kb on - strand at 5496.723 kb on - strand at 5496.723 kb on - strand at 5496.781 kb on + strand at 5496.781 kb on + strand at 5496.861 kb on + strand at 5496.862 kb on - strand at 5496.868 kb on - strand at 5496.926 kb on - strand at 5496.926 kb on - strand at 5496.947 kb on + strand at 5496.947 kb on + strand at 5496.947 kb on + strand at 5496.948 kb on - strand at 5496.948 kb on - strand at 5496.950 kb on + strand at 5496.950 kb on + strand at 5496.951 kb on - strand at 5496.951 kb on - strand at 5496.951 kb on - strand at 5497.160 kb on + strand, within PP_4830 at 5497.161 kb on + strand, within PP_4830 at 5497.161 kb on + strand, within PP_4830 at 5497.161 kb on + strand, within PP_4830 at 5497.162 kb on - strand, within PP_4830 at 5497.162 kb on - strand, within PP_4830 at 5497.162 kb on - strand, within PP_4830 at 5497.162 kb on - strand, within PP_4830 at 5497.169 kb on - strand, within PP_4830 at 5497.549 kb on - strand, within PP_4830 at 5497.601 kb on - strand, within PP_4830 at 5497.817 kb on + strand, within PP_4830 at 5497.919 kb on + strand, within PP_4830 at 5497.919 kb on + strand, within PP_4830 at 5497.919 kb on + strand, within PP_4830 at 5497.919 kb on + strand, within PP_4830 at 5498.118 kb on - strand at 5498.119 kb on - strand at 5498.179 kb on + strand at 5498.179 kb on + strand at 5498.180 kb on - strand at 5498.180 kb on - strand at 5498.390 kb on + strand, within PP_4831 at 5498.390 kb on + strand, within PP_4831 at 5498.390 kb on + strand, within PP_4831 at 5498.390 kb on + strand, within PP_4831 at 5498.391 kb on - strand, within PP_4831 at 5498.392 kb on + strand, within PP_4831 at 5498.705 kb on + strand, within PP_4831 at 5498.706 kb on - strand, within PP_4831 at 5498.706 kb on - strand, within PP_4831 at 5498.753 kb on + strand, within PP_4831 at 5498.754 kb on - strand, within PP_4831 at 5498.763 kb on + strand, within PP_4831 at 5498.764 kb on - strand, within PP_4831 at 5498.764 kb on - strand, within PP_4831 at 5498.811 kb on - strand, within PP_4831
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 5,495,996 + PP_4829 0.48 -2.6 5,495,996 + PP_4829 0.48 -3.2 5,496,583 - -2.2 5,496,583 - -1.6 5,496,707 + +0.1 5,496,708 - +0.8 5,496,708 - +0.0 5,496,722 + -1.7 5,496,722 + -0.5 5,496,722 + +0.8 5,496,723 - -0.3 5,496,723 - -1.6 5,496,723 - -1.6 5,496,723 - -0.0 5,496,781 + -0.9 5,496,781 + +0.3 5,496,861 + -0.8 5,496,862 - -1.8 5,496,868 - +0.1 5,496,926 - -3.4 5,496,926 - -3.1 5,496,947 + -3.5 5,496,947 + -2.2 5,496,947 + -2.1 5,496,948 - -1.8 5,496,948 - -1.9 5,496,950 + -1.8 5,496,950 + -1.6 5,496,951 - -2.7 5,496,951 - -2.1 5,496,951 - -1.6 5,497,160 + PP_4830 0.19 -1.4 5,497,161 + PP_4830 0.19 -3.0 5,497,161 + PP_4830 0.19 -1.7 5,497,161 + PP_4830 0.19 -1.7 5,497,162 - PP_4830 0.19 -1.2 5,497,162 - PP_4830 0.19 -3.4 5,497,162 - PP_4830 0.19 -0.7 5,497,162 - PP_4830 0.19 -1.1 5,497,169 - PP_4830 0.20 -1.2 5,497,549 - PP_4830 0.51 -2.0 5,497,601 - PP_4830 0.56 -2.4 5,497,817 + PP_4830 0.73 -2.6 5,497,919 + PP_4830 0.82 -1.5 5,497,919 + PP_4830 0.82 -3.2 5,497,919 + PP_4830 0.82 -1.6 5,497,919 + PP_4830 0.82 -1.0 5,498,118 - -0.8 5,498,119 - -0.1 5,498,179 + +0.5 5,498,179 + -1.1 5,498,180 - -0.3 5,498,180 - +0.2 5,498,390 + PP_4831 0.24 -0.9 5,498,390 + PP_4831 0.24 +0.6 5,498,390 + PP_4831 0.24 -1.8 5,498,390 + PP_4831 0.24 -1.3 5,498,391 - PP_4831 0.24 -1.3 5,498,392 + PP_4831 0.24 +0.5 5,498,705 + PP_4831 0.52 -0.0 5,498,706 - PP_4831 0.52 -1.8 5,498,706 - PP_4831 0.52 -0.9 5,498,753 + PP_4831 0.57 +0.3 5,498,754 - PP_4831 0.57 +2.2 5,498,763 + PP_4831 0.58 +0.3 5,498,764 - PP_4831 0.58 -0.9 5,498,764 - PP_4831 0.58 -0.4 5,498,811 - PP_4831 0.62 -2.6
Or see this region's nucleotide sequence