Experiment: 4-Methyl-2-oxopentanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5715 and PP_5716 are separated by 51 nucleotides PP_5716 and PP_4826 are separated by 118 nucleotides PP_4826 and PP_4827 overlap by 13 nucleotides PP_4827 and PP_4828 overlap by 4 nucleotides
PP_5715: PP_5715 - protein of unknown function, at 5,490,775 to 5,491,464
_5715
PP_5716: PP_5716 - conserved protein of unknown function, at 5,491,516 to 5,492,199
_5716
PP_4826: PP_4826 - Precorrin-3B C17-methyltransferase, at 5,492,318 to 5,494,015
_4826
PP_4827: PP_4827 - Precorrin-2 C(20)-methyltransferase, at 5,494,003 to 5,494,737
_4827
PP_4828: PP_4828 - Precorrin-8X methylmutase, at 5,494,734 to 5,495,360
_4828
Position (kb) 5492
5493
5494
5495 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5491.355 kb on + strand, within PP_5715 at 5491.355 kb on + strand, within PP_5715 at 5491.355 kb on + strand, within PP_5715 at 5491.356 kb on - strand, within PP_5715 at 5491.452 kb on - strand at 5491.452 kb on - strand at 5491.468 kb on + strand at 5491.468 kb on + strand at 5491.468 kb on + strand at 5491.468 kb on + strand at 5491.469 kb on - strand at 5491.469 kb on - strand at 5491.469 kb on - strand at 5491.509 kb on + strand at 5491.571 kb on - strand at 5491.670 kb on + strand, within PP_5716 at 5491.670 kb on + strand, within PP_5716 at 5491.671 kb on - strand, within PP_5716 at 5491.671 kb on - strand, within PP_5716 at 5491.876 kb on + strand, within PP_5716 at 5491.876 kb on + strand, within PP_5716 at 5491.876 kb on + strand, within PP_5716 at 5491.877 kb on - strand, within PP_5716 at 5491.898 kb on + strand, within PP_5716 at 5491.898 kb on + strand, within PP_5716 at 5491.947 kb on + strand, within PP_5716 at 5491.947 kb on + strand, within PP_5716 at 5491.947 kb on + strand, within PP_5716 at 5491.948 kb on - strand, within PP_5716 at 5491.948 kb on - strand, within PP_5716 at 5491.948 kb on - strand, within PP_5716 at 5491.948 kb on - strand, within PP_5716 at 5491.948 kb on - strand, within PP_5716 at 5491.969 kb on + strand, within PP_5716 at 5492.012 kb on + strand, within PP_5716 at 5492.012 kb on + strand, within PP_5716 at 5492.012 kb on + strand, within PP_5716 at 5492.012 kb on + strand, within PP_5716 at 5492.012 kb on + strand, within PP_5716 at 5492.013 kb on - strand, within PP_5716 at 5492.018 kb on + strand, within PP_5716 at 5492.018 kb on + strand, within PP_5716 at 5492.019 kb on - strand, within PP_5716 at 5492.019 kb on - strand, within PP_5716 at 5492.019 kb on - strand, within PP_5716 at 5492.019 kb on - strand, within PP_5716 at 5492.019 kb on - strand, within PP_5716 at 5492.049 kb on + strand, within PP_5716 at 5492.049 kb on + strand, within PP_5716 at 5492.049 kb on + strand, within PP_5716 at 5492.050 kb on - strand, within PP_5716 at 5492.050 kb on - strand, within PP_5716 at 5492.116 kb on + strand, within PP_5716 at 5492.116 kb on + strand, within PP_5716 at 5492.237 kb on + strand at 5492.237 kb on + strand at 5492.269 kb on - strand at 5492.269 kb on - strand at 5492.269 kb on - strand at 5492.269 kb on - strand at 5492.334 kb on + strand at 5492.335 kb on - strand at 5492.335 kb on - strand at 5492.348 kb on - strand at 5492.348 kb on - strand at 5492.349 kb on + strand at 5492.349 kb on + strand at 5492.349 kb on + strand at 5492.349 kb on + strand at 5492.389 kb on + strand at 5492.390 kb on - strand at 5492.390 kb on - strand at 5492.390 kb on - strand at 5492.460 kb on - strand at 5492.482 kb on + strand at 5492.483 kb on - strand at 5492.483 kb on - strand at 5492.504 kb on + strand, within PP_4826 at 5492.504 kb on + strand, within PP_4826 at 5492.504 kb on + strand, within PP_4826 at 5492.505 kb on - strand, within PP_4826 at 5492.589 kb on + strand, within PP_4826 at 5492.590 kb on - strand, within PP_4826 at 5492.590 kb on - strand, within PP_4826 at 5492.974 kb on - strand, within PP_4826 at 5492.974 kb on - strand, within PP_4826 at 5493.150 kb on - strand, within PP_4826 at 5493.340 kb on + strand, within PP_4826 at 5493.340 kb on + strand, within PP_4826 at 5493.536 kb on + strand, within PP_4826 at 5493.537 kb on - strand, within PP_4826 at 5493.573 kb on + strand, within PP_4826 at 5493.573 kb on + strand, within PP_4826 at 5493.573 kb on + strand, within PP_4826 at 5493.573 kb on + strand, within PP_4826 at 5493.574 kb on - strand, within PP_4826 at 5493.574 kb on - strand, within PP_4826 at 5493.574 kb on - strand, within PP_4826 at 5493.574 kb on - strand, within PP_4826 at 5493.601 kb on + strand, within PP_4826 at 5493.854 kb on - strand at 5493.940 kb on + strand at 5493.940 kb on + strand at 5494.046 kb on + strand at 5494.118 kb on + strand, within PP_4827 at 5494.118 kb on + strand, within PP_4827 at 5494.119 kb on - strand, within PP_4827 at 5494.119 kb on - strand, within PP_4827 at 5494.119 kb on - strand, within PP_4827 at 5494.119 kb on - strand, within PP_4827 at 5494.119 kb on - strand, within PP_4827 at 5494.119 kb on - strand at 5494.119 kb on - strand, within PP_4827 at 5494.275 kb on + strand, within PP_4827 at 5494.379 kb on + strand, within PP_4827 at 5494.379 kb on + strand, within PP_4827 at 5494.379 kb on + strand, within PP_4827 at 5494.379 kb on + strand, within PP_4827 at 5494.379 kb on + strand, within PP_4827 at 5494.379 kb on + strand, within PP_4827 at 5494.379 kb on + strand, within PP_4827 at 5494.379 kb on + strand, within PP_4827 at 5494.380 kb on - strand, within PP_4827 at 5494.380 kb on - strand, within PP_4827 at 5494.380 kb on - strand, within PP_4827 at 5494.380 kb on - strand, within PP_4827 at 5494.380 kb on - strand, within PP_4827 at 5494.380 kb on - strand, within PP_4827 at 5494.385 kb on + strand, within PP_4827 at 5494.385 kb on + strand, within PP_4827 at 5494.385 kb on + strand, within PP_4827 at 5494.385 kb on + strand, within PP_4827 at 5494.385 kb on + strand, within PP_4827 at 5494.385 kb on + strand, within PP_4827 at 5494.385 kb on + strand, within PP_4827 at 5494.385 kb on + strand, within PP_4827 at 5494.385 kb on + strand, within PP_4827 at 5494.386 kb on - strand, within PP_4827 at 5494.386 kb on - strand, within PP_4827 at 5494.386 kb on - strand, within PP_4827 at 5494.386 kb on - strand, within PP_4827 at 5494.386 kb on - strand, within PP_4827 at 5494.386 kb on - strand, within PP_4827 at 5494.394 kb on + strand, within PP_4827 at 5494.395 kb on - strand, within PP_4827 at 5494.395 kb on - strand, within PP_4827 at 5494.462 kb on + strand, within PP_4827 at 5494.462 kb on + strand, within PP_4827 at 5494.462 kb on + strand, within PP_4827 at 5494.463 kb on - strand, within PP_4827 at 5494.463 kb on - strand, within PP_4827 at 5494.463 kb on - strand, within PP_4827 at 5494.467 kb on + strand, within PP_4827 at 5494.467 kb on + strand, within PP_4827 at 5494.478 kb on + strand, within PP_4827 at 5494.479 kb on - strand, within PP_4827 at 5494.503 kb on - strand, within PP_4827 at 5494.503 kb on - strand, within PP_4827 at 5494.503 kb on - strand, within PP_4827 at 5494.503 kb on - strand, within PP_4827 at 5494.588 kb on - strand, within PP_4827 at 5494.628 kb on + strand, within PP_4827 at 5494.937 kb on - strand, within PP_4828 at 5495.011 kb on - strand, within PP_4828
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Methyl-2-oxopentanoic (C) remove 5,491,355 + PP_5715 0.84 +0.3 5,491,355 + PP_5715 0.84 -0.3 5,491,355 + PP_5715 0.84 +0.6 5,491,356 - PP_5715 0.84 +0.1 5,491,452 - -0.1 5,491,452 - +0.5 5,491,468 + -0.3 5,491,468 + +0.6 5,491,468 + -0.3 5,491,468 + -0.2 5,491,469 - +0.2 5,491,469 - -0.7 5,491,469 - -0.7 5,491,509 + +0.6 5,491,571 - +0.9 5,491,670 + PP_5716 0.23 +0.1 5,491,670 + PP_5716 0.23 +0.6 5,491,671 - PP_5716 0.23 -0.4 5,491,671 - PP_5716 0.23 +0.5 5,491,876 + PP_5716 0.53 +0.6 5,491,876 + PP_5716 0.53 -0.4 5,491,876 + PP_5716 0.53 -1.1 5,491,877 - PP_5716 0.53 -0.3 5,491,898 + PP_5716 0.56 +0.5 5,491,898 + PP_5716 0.56 -0.4 5,491,947 + PP_5716 0.63 +1.8 5,491,947 + PP_5716 0.63 -1.7 5,491,947 + PP_5716 0.63 -0.9 5,491,948 - PP_5716 0.63 -1.0 5,491,948 - PP_5716 0.63 -0.3 5,491,948 - PP_5716 0.63 -0.5 5,491,948 - PP_5716 0.63 -0.7 5,491,948 - PP_5716 0.63 +0.3 5,491,969 + PP_5716 0.66 +0.4 5,492,012 + PP_5716 0.73 +0.1 5,492,012 + PP_5716 0.73 -0.1 5,492,012 + PP_5716 0.73 -1.4 5,492,012 + PP_5716 0.73 +0.1 5,492,012 + PP_5716 0.73 -0.9 5,492,013 - PP_5716 0.73 -0.1 5,492,018 + PP_5716 0.73 +0.0 5,492,018 + PP_5716 0.73 +0.1 5,492,019 - PP_5716 0.74 -0.4 5,492,019 - PP_5716 0.74 +0.4 5,492,019 - PP_5716 0.74 +0.3 5,492,019 - PP_5716 0.74 +0.0 5,492,019 - PP_5716 0.74 +0.6 5,492,049 + PP_5716 0.78 +0.5 5,492,049 + PP_5716 0.78 +0.0 5,492,049 + PP_5716 0.78 -0.7 5,492,050 - PP_5716 0.78 +0.3 5,492,050 - PP_5716 0.78 +1.1 5,492,116 + PP_5716 0.88 +0.2 5,492,116 + PP_5716 0.88 -0.6 5,492,237 + +0.1 5,492,237 + +0.9 5,492,269 - -1.3 5,492,269 - -0.2 5,492,269 - -0.0 5,492,269 - +1.1 5,492,334 + -2.5 5,492,335 - -1.1 5,492,335 - -2.2 5,492,348 - -2.3 5,492,348 - -1.6 5,492,349 + -1.8 5,492,349 + -0.5 5,492,349 + -3.0 5,492,349 + -2.0 5,492,389 + -0.8 5,492,390 - -2.4 5,492,390 - -1.2 5,492,390 - -0.8 5,492,460 - -1.5 5,492,482 + -2.2 5,492,483 - -2.3 5,492,483 - -1.2 5,492,504 + PP_4826 0.11 -1.5 5,492,504 + PP_4826 0.11 -0.5 5,492,504 + PP_4826 0.11 -1.1 5,492,505 - PP_4826 0.11 -2.4 5,492,589 + PP_4826 0.16 -2.6 5,492,590 - PP_4826 0.16 -0.9 5,492,590 - PP_4826 0.16 -2.1 5,492,974 - PP_4826 0.39 -3.3 5,492,974 - PP_4826 0.39 -1.5 5,493,150 - PP_4826 0.49 -1.2 5,493,340 + PP_4826 0.60 -1.9 5,493,340 + PP_4826 0.60 -0.4 5,493,536 + PP_4826 0.72 -0.3 5,493,537 - PP_4826 0.72 -2.2 5,493,573 + PP_4826 0.74 -1.6 5,493,573 + PP_4826 0.74 -1.7 5,493,573 + PP_4826 0.74 -2.0 5,493,573 + PP_4826 0.74 -1.6 5,493,574 - PP_4826 0.74 -2.3 5,493,574 - PP_4826 0.74 -1.0 5,493,574 - PP_4826 0.74 -1.2 5,493,574 - PP_4826 0.74 -2.1 5,493,601 + PP_4826 0.76 -2.5 5,493,854 - -4.2 5,493,940 + -0.5 5,493,940 + -3.5 5,494,046 + -2.4 5,494,118 + PP_4827 0.16 -0.5 5,494,118 + PP_4827 0.16 -1.6 5,494,119 - PP_4827 0.16 -3.2 5,494,119 - PP_4827 0.16 -3.8 5,494,119 - PP_4827 0.16 -0.1 5,494,119 - PP_4827 0.16 -2.4 5,494,119 - PP_4827 0.16 -1.4 5,494,119 - -0.1 5,494,119 - PP_4827 0.16 -1.4 5,494,275 + PP_4827 0.37 -0.6 5,494,379 + PP_4827 0.51 -2.0 5,494,379 + PP_4827 0.51 -2.0 5,494,379 + PP_4827 0.51 -3.4 5,494,379 + PP_4827 0.51 -1.0 5,494,379 + PP_4827 0.51 -0.5 5,494,379 + PP_4827 0.51 -1.5 5,494,379 + PP_4827 0.51 -1.3 5,494,379 + PP_4827 0.51 -1.8 5,494,380 - PP_4827 0.51 -3.3 5,494,380 - PP_4827 0.51 -2.7 5,494,380 - PP_4827 0.51 -1.9 5,494,380 - PP_4827 0.51 -1.5 5,494,380 - PP_4827 0.51 -2.9 5,494,380 - PP_4827 0.51 +0.3 5,494,385 + PP_4827 0.52 -4.0 5,494,385 + PP_4827 0.52 -1.0 5,494,385 + PP_4827 0.52 -3.6 5,494,385 + PP_4827 0.52 -1.2 5,494,385 + PP_4827 0.52 -3.1 5,494,385 + PP_4827 0.52 -1.2 5,494,385 + PP_4827 0.52 -2.3 5,494,385 + PP_4827 0.52 -1.4 5,494,385 + PP_4827 0.52 -1.9 5,494,386 - PP_4827 0.52 -2.5 5,494,386 - PP_4827 0.52 -0.4 5,494,386 - PP_4827 0.52 +1.2 5,494,386 - PP_4827 0.52 -1.0 5,494,386 - PP_4827 0.52 -3.4 5,494,386 - PP_4827 0.52 -4.1 5,494,394 + PP_4827 0.53 -1.3 5,494,395 - PP_4827 0.53 -1.2 5,494,395 - PP_4827 0.53 -2.1 5,494,462 + PP_4827 0.62 -1.7 5,494,462 + PP_4827 0.62 -2.3 5,494,462 + PP_4827 0.62 -2.7 5,494,463 - PP_4827 0.63 -1.5 5,494,463 - PP_4827 0.63 -2.5 5,494,463 - PP_4827 0.63 -2.3 5,494,467 + PP_4827 0.63 -3.4 5,494,467 + PP_4827 0.63 -1.5 5,494,478 + PP_4827 0.65 -0.8 5,494,479 - PP_4827 0.65 -0.0 5,494,503 - PP_4827 0.68 -1.7 5,494,503 - PP_4827 0.68 -1.8 5,494,503 - PP_4827 0.68 -0.8 5,494,503 - PP_4827 0.68 -1.6 5,494,588 - PP_4827 0.80 -0.3 5,494,628 + PP_4827 0.85 -2.6 5,494,937 - PP_4828 0.32 -0.7 5,495,011 - PP_4828 0.44 -1.1
Or see this region's nucleotide sequence