Experiment: 1,5-Pentanediol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0421 and PP_0422 overlap by 4 nucleotides PP_0422 and PP_0423 are separated by 147 nucleotides PP_0423 and PP_0424 overlap by 4 nucleotides PP_0424 and PP_0425 are separated by 190 nucleotides
PP_0421: PP_0421 - Anthranilate phosphoribosyltransferase, at 509,981 to 511,030
_0421
PP_0422: PP_0422 - Indole-3-glycerol phosphate synthase, at 511,027 to 511,860
_0422
PP_0423: PP_0423 - conserved protein of unknown function, at 512,008 to 512,712
_0423
PP_0424: PP_0424 - DNA-binding transcriptional dual regulator, at 512,709 to 513,353
_0424
PP_0425: PP_0425 - conserved protein of unknown function, at 513,544 to 513,966
_0425
Position (kb) 512
513 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 511.279 kb on + strand, within PP_0422 at 511.279 kb on + strand, within PP_0422 at 511.327 kb on + strand, within PP_0422 at 511.348 kb on + strand, within PP_0422 at 511.349 kb on - strand, within PP_0422 at 511.349 kb on - strand, within PP_0422 at 511.587 kb on + strand, within PP_0422 at 511.587 kb on + strand, within PP_0422 at 511.705 kb on - strand, within PP_0422 at 511.902 kb on - strand at 511.931 kb on + strand at 511.931 kb on + strand at 511.997 kb on + strand at 511.997 kb on + strand at 511.997 kb on + strand at 511.998 kb on - strand at 511.998 kb on - strand at 512.425 kb on + strand, within PP_0423 at 512.645 kb on + strand at 512.677 kb on + strand at 512.687 kb on + strand at 512.687 kb on + strand at 512.688 kb on - strand at 512.688 kb on - strand at 512.688 kb on - strand at 512.710 kb on + strand at 512.711 kb on - strand at 512.957 kb on + strand, within PP_0424 at 512.998 kb on + strand, within PP_0424 at 513.043 kb on + strand at 513.043 kb on + strand, within PP_0424 at 513.043 kb on + strand, within PP_0424 at 513.129 kb on + strand, within PP_0424 at 513.130 kb on - strand, within PP_0424 at 513.130 kb on - strand, within PP_0424 at 513.263 kb on + strand, within PP_0424 at 513.264 kb on - strand, within PP_0424 at 513.280 kb on + strand, within PP_0424 at 513.300 kb on + strand at 513.300 kb on + strand at 513.301 kb on - strand at 513.301 kb on - strand at 513.371 kb on + strand at 513.380 kb on + strand at 513.381 kb on - strand at 513.433 kb on + strand at 513.434 kb on - strand at 513.444 kb on - strand at 513.459 kb on - strand at 513.461 kb on + strand at 513.504 kb on + strand at 513.504 kb on + strand at 513.504 kb on + strand at 513.505 kb on - strand at 513.505 kb on - strand at 513.505 kb on - strand at 513.556 kb on - strand at 513.556 kb on - strand at 513.556 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1,5-Pentanediol (C) remove 511,279 + PP_0422 0.30 -2.3 511,279 + PP_0422 0.30 -4.5 511,327 + PP_0422 0.36 -5.2 511,348 + PP_0422 0.38 -5.3 511,349 - PP_0422 0.39 -2.5 511,349 - PP_0422 0.39 -3.4 511,587 + PP_0422 0.67 -4.1 511,587 + PP_0422 0.67 -4.2 511,705 - PP_0422 0.81 -1.2 511,902 - -0.1 511,931 + -0.0 511,931 + -0.2 511,997 + -0.2 511,997 + -0.3 511,997 + +0.3 511,998 - -0.8 511,998 - -0.3 512,425 + PP_0423 0.59 +0.8 512,645 + -0.1 512,677 + +0.3 512,687 + -0.1 512,687 + +0.4 512,688 - -0.8 512,688 - +0.0 512,688 - +0.3 512,710 + +0.4 512,711 - +0.2 512,957 + PP_0424 0.38 +1.0 512,998 + PP_0424 0.45 +0.2 513,043 + +0.4 513,043 + PP_0424 0.52 -0.8 513,043 + PP_0424 0.52 -0.2 513,129 + PP_0424 0.65 -0.6 513,130 - PP_0424 0.65 -0.5 513,130 - PP_0424 0.65 +0.2 513,263 + PP_0424 0.86 +0.4 513,264 - PP_0424 0.86 +0.6 513,280 + PP_0424 0.89 -0.2 513,300 + -0.0 513,300 + -0.5 513,301 - -0.2 513,301 - +0.2 513,371 + +0.5 513,380 + +0.2 513,381 - -0.2 513,433 + -0.5 513,434 - -0.6 513,444 - +0.3 513,459 - +0.4 513,461 + +0.1 513,504 + -0.2 513,504 + -0.1 513,504 + +0.0 513,505 - -0.1 513,505 - -0.2 513,505 - +0.4 513,556 - -0.5 513,556 - -0.9 513,556 - -0.3
Or see this region's nucleotide sequence