Strain Fitness in Agrobacterium fabrum C58 around Atu6052

Experiment: Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6050 and Atu6051 are separated by 8 nucleotidesAtu6051 and Atu6052 are separated by 167 nucleotidesAtu6052 and Atu6053 are separated by 96 nucleotidesAtu6053 and Atu6054 are separated by 28 nucleotides Atu6050: Atu6050 - conserved hypothetical protein, at 62,881 to 63,597 Atu6050 Atu6051: Atu6051 - conserved hypothetical protein, at 63,606 to 64,190 Atu6051 Atu6052: Atu6052 - conserved hypothetical protein, at 64,358 to 65,185 Atu6052 Atu6053: Atu6053 - conserved hypothetical protein, at 65,282 to 65,686 Atu6053 Atu6054: Atu6054 - conserved hypothetical protein, at 65,715 to 66,107 Atu6054 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1 2 3at 63.364 kb on + strand, within Atu6050at 63.367 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.378 kb on + strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.386 kb on - strand, within Atu6050at 63.429 kb on - strand, within Atu6050at 63.446 kb on + strand, within Atu6050at 63.523 kb on - strand, within Atu6050at 63.573 kb on - strandat 63.625 kb on + strandat 63.635 kb on - strandat 63.648 kb on - strandat 63.678 kb on + strand, within Atu6051at 63.679 kb on - strand, within Atu6051at 63.758 kb on + strand, within Atu6051at 63.758 kb on + strand, within Atu6051at 63.758 kb on + strand, within Atu6051at 63.766 kb on - strand, within Atu6051at 63.766 kb on - strand, within Atu6051at 63.779 kb on - strand, within Atu6051at 63.856 kb on - strand, within Atu6051at 63.878 kb on + strand, within Atu6051at 63.886 kb on - strand, within Atu6051at 63.935 kb on - strand, within Atu6051at 63.982 kb on + strand, within Atu6051at 63.990 kb on - strand, within Atu6051at 63.990 kb on - strand, within Atu6051at 64.018 kb on - strand, within Atu6051at 64.018 kb on - strand, within Atu6051at 64.031 kb on + strand, within Atu6051at 64.039 kb on - strand, within Atu6051at 64.039 kb on - strand, within Atu6051at 64.071 kb on + strand, within Atu6051at 64.071 kb on - strand, within Atu6051at 64.082 kb on + strand, within Atu6051at 64.090 kb on - strand, within Atu6051at 64.124 kb on - strand, within Atu6051at 64.167 kb on + strandat 64.172 kb on + strandat 64.177 kb on + strandat 64.180 kb on - strandat 64.203 kb on - strandat 64.317 kb on + strandat 64.399 kb on + strandat 64.412 kb on - strandat 64.422 kb on + strandat 64.422 kb on + strandat 64.430 kb on - strandat 64.430 kb on - strandat 64.432 kb on + strandat 64.449 kb on - strand, within Atu6052at 64.477 kb on - strand, within Atu6052at 64.480 kb on + strand, within Atu6052at 64.482 kb on + strand, within Atu6052at 64.482 kb on + strand, within Atu6052at 64.482 kb on + strand, within Atu6052at 64.490 kb on - strand, within Atu6052at 64.490 kb on - strand, within Atu6052at 64.493 kb on + strand, within Atu6052at 64.524 kb on + strand, within Atu6052at 64.563 kb on - strand, within Atu6052at 64.714 kb on + strand, within Atu6052at 64.722 kb on - strand, within Atu6052at 64.733 kb on + strand, within Atu6052at 64.741 kb on - strand, within Atu6052at 64.788 kb on + strand, within Atu6052at 64.798 kb on + strand, within Atu6052at 64.805 kb on + strand, within Atu6052at 64.806 kb on - strand, within Atu6052at 64.806 kb on - strand, within Atu6052at 64.806 kb on - strand, within Atu6052at 64.853 kb on - strand, within Atu6052at 64.853 kb on - strand, within Atu6052at 64.905 kb on - strand, within Atu6052at 64.921 kb on + strand, within Atu6052at 64.921 kb on + strand, within Atu6052at 65.008 kb on + strand, within Atu6052at 65.013 kb on + strand, within Atu6052at 65.022 kb on - strand, within Atu6052at 65.041 kb on + strand, within Atu6052at 65.047 kb on + strand, within Atu6052at 65.047 kb on + strand, within Atu6052at 65.085 kb on - strand, within Atu6052at 65.095 kb on + strand, within Atu6052at 65.095 kb on + strand, within Atu6052at 65.095 kb on + strand, within Atu6052at 65.103 kb on - strandat 65.157 kb on + strandat 65.165 kb on - strandat 65.179 kb on + strandat 65.187 kb on - strandat 65.206 kb on + strandat 65.259 kb on - strandat 65.358 kb on + strand, within Atu6053at 65.376 kb on + strand, within Atu6053at 65.389 kb on - strand, within Atu6053at 65.413 kb on - strand, within Atu6053at 65.424 kb on + strand, within Atu6053at 65.430 kb on - strand, within Atu6053at 65.477 kb on - strand, within Atu6053at 65.498 kb on - strand, within Atu6053at 65.516 kb on - strand, within Atu6053at 65.518 kb on + strand, within Atu6053at 65.543 kb on + strand, within Atu6053at 65.608 kb on - strand, within Atu6053at 65.643 kb on - strand, within Atu6053at 65.697 kb on + strandat 65.704 kb on + strandat 65.705 kb on - strandat 65.836 kb on + strand, within Atu6054at 65.841 kb on + strand, within Atu6054at 65.882 kb on - strand, within Atu6054at 65.886 kb on + strand, within Atu6054at 65.887 kb on - strand, within Atu6054at 65.894 kb on - strand, within Atu6054at 65.933 kb on + strand, within Atu6054at 65.933 kb on + strand, within Atu6054at 65.933 kb on + strand, within Atu6054at 65.933 kb on + strand, within Atu6054at 65.933 kb on + strand, within Atu6054at 65.934 kb on - strand, within Atu6054at 65.934 kb on - strand, within Atu6054at 66.096 kb on + strandat 66.116 kb on + strandat 66.116 kb on + strandat 66.116 kb on + strandat 66.116 kb on + strandat 66.118 kb on + strandat 66.124 kb on - strandat 66.124 kb on - strandat 66.138 kb on - strandat 66.148 kb on + strandat 66.171 kb on + strandat 66.171 kb on + strandat 66.179 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
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63,364 + Atu6050 0.67 +0.1
63,367 + Atu6050 0.68 -1.4
63,378 + Atu6050 0.69 +0.2
63,378 + Atu6050 0.69 +2.2
63,378 + Atu6050 0.69 -1.2
63,378 + Atu6050 0.69 +0.5
63,378 + Atu6050 0.69 +0.6
63,378 + Atu6050 0.69 -2.0
63,378 + Atu6050 0.69 +3.4
63,378 + Atu6050 0.69 -0.2
63,378 + Atu6050 0.69 +0.0
63,378 + Atu6050 0.69 -0.0
63,378 + Atu6050 0.69 +1.5
63,378 + Atu6050 0.69 +0.6
63,378 + Atu6050 0.69 -0.4
63,386 - Atu6050 0.70 -1.1
63,386 - Atu6050 0.70 +1.7
63,386 - Atu6050 0.70 +0.8
63,386 - Atu6050 0.70 -1.8
63,386 - Atu6050 0.70 -2.5
63,386 - Atu6050 0.70 +1.4
63,386 - Atu6050 0.70 +0.6
63,386 - Atu6050 0.70 +0.2
63,429 - Atu6050 0.76 +1.1
63,446 + Atu6050 0.79 -1.0
63,523 - Atu6050 0.90 -0.4
63,573 - +1.0
63,625 + -0.3
63,635 - +0.5
63,648 - +0.7
63,678 + Atu6051 0.12 +1.1
63,679 - Atu6051 0.12 +0.3
63,758 + Atu6051 0.26 -1.0
63,758 + Atu6051 0.26 -0.4
63,758 + Atu6051 0.26 -1.8
63,766 - Atu6051 0.27 -0.8
63,766 - Atu6051 0.27 -1.1
63,779 - Atu6051 0.30 -0.5
63,856 - Atu6051 0.43 +0.4
63,878 + Atu6051 0.46 +0.2
63,886 - Atu6051 0.48 +0.5
63,935 - Atu6051 0.56 -0.1
63,982 + Atu6051 0.64 -1.4
63,990 - Atu6051 0.66 +1.2
63,990 - Atu6051 0.66 -0.4
64,018 - Atu6051 0.70 +0.7
64,018 - Atu6051 0.70 +0.3
64,031 + Atu6051 0.73 -0.4
64,039 - Atu6051 0.74 -0.2
64,039 - Atu6051 0.74 +1.4
64,071 + Atu6051 0.79 +0.4
64,071 - Atu6051 0.79 -0.5
64,082 + Atu6051 0.81 -0.8
64,090 - Atu6051 0.83 +1.2
64,124 - Atu6051 0.89 +0.1
64,167 + -1.4
64,172 + +0.2
64,177 + +1.5
64,180 - -0.7
64,203 - +1.6
64,317 + -0.4
64,399 + -0.3
64,412 - +0.7
64,422 + +1.6
64,422 + +0.4
64,430 - +0.1
64,430 - +0.5
64,432 + -0.7
64,449 - Atu6052 0.11 -0.2
64,477 - Atu6052 0.14 +1.3
64,480 + Atu6052 0.15 +0.4
64,482 + Atu6052 0.15 +0.9
64,482 + Atu6052 0.15 -0.3
64,482 + Atu6052 0.15 +0.7
64,490 - Atu6052 0.16 +0.6
64,490 - Atu6052 0.16 -1.0
64,493 + Atu6052 0.16 +1.7
64,524 + Atu6052 0.20 +0.8
64,563 - Atu6052 0.25 +1.2
64,714 + Atu6052 0.43 +0.6
64,722 - Atu6052 0.44 +0.4
64,733 + Atu6052 0.45 +0.8
64,741 - Atu6052 0.46 +0.3
64,788 + Atu6052 0.52 +0.9
64,798 + Atu6052 0.53 +0.2
64,805 + Atu6052 0.54 +0.8
64,806 - Atu6052 0.54 -0.3
64,806 - Atu6052 0.54 -1.0
64,806 - Atu6052 0.54 +1.0
64,853 - Atu6052 0.60 +1.0
64,853 - Atu6052 0.60 +0.6
64,905 - Atu6052 0.66 +0.6
64,921 + Atu6052 0.68 +0.1
64,921 + Atu6052 0.68 +0.2
65,008 + Atu6052 0.79 +2.6
65,013 + Atu6052 0.79 -0.2
65,022 - Atu6052 0.80 +1.0
65,041 + Atu6052 0.82 +0.2
65,047 + Atu6052 0.83 +0.7
65,047 + Atu6052 0.83 -0.4
65,085 - Atu6052 0.88 +1.1
65,095 + Atu6052 0.89 -0.2
65,095 + Atu6052 0.89 +0.4
65,095 + Atu6052 0.89 +0.9
65,103 - +1.4
65,157 + +0.5
65,165 - +0.6
65,179 + -0.3
65,187 - +1.1
65,206 + -0.0
65,259 - +0.0
65,358 + Atu6053 0.19 +1.6
65,376 + Atu6053 0.23 +0.5
65,389 - Atu6053 0.26 +0.7
65,413 - Atu6053 0.32 +1.4
65,424 + Atu6053 0.35 -0.5
65,430 - Atu6053 0.37 +0.0
65,477 - Atu6053 0.48 +0.2
65,498 - Atu6053 0.53 +0.3
65,516 - Atu6053 0.58 +1.5
65,518 + Atu6053 0.58 -0.4
65,543 + Atu6053 0.64 +0.7
65,608 - Atu6053 0.80 -0.4
65,643 - Atu6053 0.89 -0.6
65,697 + +0.6
65,704 + +0.3
65,705 - -0.1
65,836 + Atu6054 0.31 +0.3
65,841 + Atu6054 0.32 +0.3
65,882 - Atu6054 0.42 +2.3
65,886 + Atu6054 0.44 -0.4
65,887 - Atu6054 0.44 -0.4
65,894 - Atu6054 0.46 +0.1
65,933 + Atu6054 0.55 +0.4
65,933 + Atu6054 0.55 -0.4
65,933 + Atu6054 0.55 +1.7
65,933 + Atu6054 0.55 -0.4
65,933 + Atu6054 0.55 +0.4
65,934 - Atu6054 0.56 +0.1
65,934 - Atu6054 0.56 -0.3
66,096 + +1.1
66,116 + -0.2
66,116 + -0.7
66,116 + +0.2
66,116 + -0.7
66,118 + -0.1
66,124 - -0.4
66,124 - +0.8
66,138 - +1.6
66,148 + +2.4
66,171 + -1.5
66,171 + +1.6
66,179 - -0.6

Or see this region's nucleotide sequence