Strain Fitness in Pseudomonas putida KT2440 around PP_5325

Experiment: 2-methyl-1-butanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5324 and PP_5325 are separated by 162 nucleotidesPP_5325 and PP_5326 are separated by 101 nucleotides PP_5324: PP_5324 - Response regulator, at 6,069,754 to 6,070,644 _5324 PP_5325: PP_5325 - phosphate transport-associated protein, at 6,070,807 to 6,071,577 _5325 PP_5326: PP_5326 - phosphate ABC transporter ATP-binding protein, at 6,071,679 to 6,072,524 _5326 Position (kb) 6070 6071 6072Strain fitness (log2 ratio) -2 -1 0 1at 6069.812 kb on + strandat 6069.813 kb on - strandat 6069.813 kb on - strandat 6070.288 kb on + strand, within PP_5324at 6070.288 kb on + strand, within PP_5324at 6070.289 kb on - strand, within PP_5324at 6070.540 kb on - strand, within PP_5324at 6070.572 kb on + strandat 6070.572 kb on + strandat 6070.573 kb on - strandat 6070.639 kb on - strandat 6070.668 kb on + strandat 6070.669 kb on - strandat 6070.673 kb on + strandat 6070.673 kb on + strandat 6070.674 kb on - strandat 6070.696 kb on + strandat 6070.697 kb on - strandat 6070.697 kb on - strandat 6070.808 kb on + strandat 6070.808 kb on + strandat 6070.809 kb on - strandat 6070.809 kb on - strandat 6070.809 kb on - strandat 6070.813 kb on - strandat 6070.837 kb on - strandat 6070.928 kb on + strand, within PP_5325at 6070.928 kb on + strand, within PP_5325at 6070.929 kb on - strand, within PP_5325at 6072.525 kb on - strandat 6072.525 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-methyl-1-butanol (C)
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6,069,812 + +0.1
6,069,813 - +0.2
6,069,813 - +0.9
6,070,288 + PP_5324 0.60 -0.1
6,070,288 + PP_5324 0.60 -0.5
6,070,289 - PP_5324 0.60 +0.2
6,070,540 - PP_5324 0.88 +0.1
6,070,572 + -1.1
6,070,572 + +0.2
6,070,573 - +0.3
6,070,639 - +0.4
6,070,668 + -0.2
6,070,669 - -2.2
6,070,673 + -1.1
6,070,673 + +0.5
6,070,674 - +0.7
6,070,696 + -0.9
6,070,697 - +0.0
6,070,697 - +0.6
6,070,808 + -0.7
6,070,808 + -0.5
6,070,809 - +0.1
6,070,809 - +0.5
6,070,809 - -1.1
6,070,813 - +0.3
6,070,837 - +0.2
6,070,928 + PP_5325 0.16 -2.1
6,070,928 + PP_5325 0.16 -1.0
6,070,929 - PP_5325 0.16 +0.8
6,072,525 - -0.2
6,072,525 - +0.1

Or see this region's nucleotide sequence