Strain Fitness in Pseudomonas putida KT2440 around PP_0538

Experiment: 2-methyl-1-butanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0537 and PP_0538 are separated by 182 nucleotidesPP_0538 and PP_0539 are separated by 92 nucleotidesPP_0539 and PP_0540 are separated by 20 nucleotides PP_0537: PP_0537 - putative transcriptional regulator, at 624,205 to 624,906 _0537 PP_0538: PP_0538 - inorganic pyrophosphatase, at 625,089 to 625,616 _0538 PP_0539: PP_0539 - glucose-regulated peptidase, at 625,709 to 626,524 _0539 PP_0540: PP_0540 - conserved inner membrane protein, at 626,545 to 627,192 _0540 Position (kb) 625 626Strain fitness (log2 ratio) -1 0 1at 624.141 kb on + strandat 624.142 kb on - strandat 624.142 kb on - strandat 624.158 kb on + strandat 624.158 kb on + strandat 624.158 kb on + strandat 624.158 kb on + strandat 624.158 kb on + strandat 624.158 kb on + strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.293 kb on + strand, within PP_0537at 624.293 kb on + strand, within PP_0537at 624.294 kb on - strand, within PP_0537at 624.308 kb on + strand, within PP_0537at 624.309 kb on - strand, within PP_0537at 624.309 kb on - strand, within PP_0537at 624.335 kb on + strand, within PP_0537at 624.335 kb on + strand, within PP_0537at 624.335 kb on + strand, within PP_0537at 624.335 kb on + strand, within PP_0537at 624.336 kb on + strand, within PP_0537at 624.336 kb on - strand, within PP_0537at 624.401 kb on + strand, within PP_0537at 624.451 kb on - strand, within PP_0537at 624.602 kb on + strand, within PP_0537at 624.602 kb on + strand, within PP_0537at 624.602 kb on + strand, within PP_0537at 624.602 kb on + strand, within PP_0537at 624.602 kb on + strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.648 kb on + strand, within PP_0537at 624.986 kb on + strandat 624.999 kb on + strandat 624.999 kb on + strandat 624.999 kb on + strandat 625.000 kb on - strandat 625.000 kb on - strandat 625.009 kb on + strandat 625.658 kb on - strandat 625.658 kb on - strandat 625.660 kb on - strandat 625.660 kb on - strandat 625.783 kb on - strandat 625.783 kb on - strandat 625.803 kb on + strand, within PP_0539at 625.803 kb on + strand, within PP_0539at 625.803 kb on + strand, within PP_0539at 625.804 kb on - strand, within PP_0539at 625.816 kb on - strand, within PP_0539at 625.844 kb on - strand, within PP_0539at 625.896 kb on + strand, within PP_0539at 625.896 kb on + strand, within PP_0539at 625.896 kb on + strand, within PP_0539at 625.896 kb on + strand, within PP_0539at 625.897 kb on - strand, within PP_0539at 625.956 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.288 kb on + strand, within PP_0539at 626.491 kb on + strandat 626.492 kb on - strandat 626.492 kb on - strandat 626.539 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-methyl-1-butanol (C)
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624,141 + +0.2
624,142 - -1.3
624,142 - -0.6
624,158 + +0.5
624,158 + +0.1
624,158 + -0.5
624,158 + -0.2
624,158 + +0.2
624,158 + -0.3
624,159 - -1.2
624,159 - +0.3
624,159 - +0.0
624,159 - +0.6
624,159 - +0.3
624,159 - -0.1
624,159 - -1.4
624,159 - -0.1
624,293 + PP_0537 0.13 +0.3
624,293 + PP_0537 0.13 -0.1
624,294 - PP_0537 0.13 +0.3
624,308 + PP_0537 0.15 -0.2
624,309 - PP_0537 0.15 -0.2
624,309 - PP_0537 0.15 +0.7
624,335 + PP_0537 0.19 -0.8
624,335 + PP_0537 0.19 +0.3
624,335 + PP_0537 0.19 +0.7
624,335 + PP_0537 0.19 -0.1
624,336 + PP_0537 0.19 -0.2
624,336 - PP_0537 0.19 +0.1
624,401 + PP_0537 0.28 +1.1
624,451 - PP_0537 0.35 +0.1
624,602 + PP_0537 0.57 +1.0
624,602 + PP_0537 0.57 -0.3
624,602 + PP_0537 0.57 +1.5
624,602 + PP_0537 0.57 -0.0
624,602 + PP_0537 0.57 +0.5
624,603 - PP_0537 0.57 +0.4
624,603 - PP_0537 0.57 +0.3
624,603 - PP_0537 0.57 +0.3
624,603 - PP_0537 0.57 +0.3
624,603 - PP_0537 0.57 -0.4
624,603 - PP_0537 0.57 +0.3
624,648 + PP_0537 0.63 -0.5
624,986 + -0.3
624,999 + +0.7
624,999 + +1.0
624,999 + -0.4
625,000 - +0.9
625,000 - -1.0
625,009 + +0.2
625,658 - +0.4
625,658 - +0.5
625,660 - -0.6
625,660 - -0.0
625,783 - +1.1
625,783 - +1.3
625,803 + PP_0539 0.12 +0.1
625,803 + PP_0539 0.12 +0.6
625,803 + PP_0539 0.12 -0.3
625,804 - PP_0539 0.12 +0.5
625,816 - PP_0539 0.13 -0.1
625,844 - PP_0539 0.17 +0.3
625,896 + PP_0539 0.23 -0.3
625,896 + PP_0539 0.23 +0.6
625,896 + PP_0539 0.23 +0.5
625,896 + PP_0539 0.23 -0.6
625,897 - PP_0539 0.23 -0.9
625,956 + PP_0539 0.30 +0.2
626,079 + PP_0539 0.45 -0.9
626,079 + PP_0539 0.45 -0.0
626,079 + PP_0539 0.45 -0.8
626,079 + PP_0539 0.45 +0.5
626,079 + PP_0539 0.45 +0.2
626,079 + PP_0539 0.45 +0.5
626,079 + PP_0539 0.45 -0.2
626,080 - PP_0539 0.45 -0.7
626,080 - PP_0539 0.45 -0.1
626,080 - PP_0539 0.45 +0.5
626,080 - PP_0539 0.45 +0.1
626,080 - PP_0539 0.45 +0.4
626,080 - PP_0539 0.45 +0.1
626,288 + PP_0539 0.71 -0.0
626,491 + +0.4
626,492 - +0.0
626,492 - -1.1
626,539 - +0.3

Or see this region's nucleotide sequence