Strain Fitness in Pseudomonas putida KT2440 around PP_2212

Experiment: Beta-alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Beta-alanine (C)
2,517,958	+		PP_2211	0.37	+0.6
2,517,959	-		PP_2211	0.37	+0.4
2,517,995	+		PP_2211	0.40	+0.2
2,517,996	-		PP_2211	0.41	+0.1
2,518,175	+		PP_2211	0.58	-1.4
2,518,176	-		PP_2211	0.58	+0.3
2,518,244	-		PP_2211	0.65	-0.2
2,518,256	+		PP_2211	0.66	-0.1
2,518,257	-		PP_2211	0.66	-0.2
2,518,407	-		PP_2211	0.81	-1.3
2,518,407	-		PP_2211	0.81	+0.4
2,518,428	+		PP_2211	0.83	+0.0
2,518,429	-		PP_2211	0.83	-0.6
2,518,523	+				+0.6
2,518,523	+				+0.1
2,518,523	+				-1.1
2,518,523	+				+0.8
2,518,524	-				-1.0
2,518,526	-				+0.6
2,518,526	-				+0.0
2,518,565	+				-0.1
2,518,624	+				-0.5
2,518,624	+				-0.4
2,518,730	+				+0.4
2,518,731	-				+0.3
2,518,731	-				-0.8
2,518,732	+				+0.3
2,518,732	+				+0.0
2,518,732	+				+1.0
2,518,732	+				+0.5
2,518,732	+				-0.3
2,518,732	+				+0.5
2,518,732	+				-0.5
2,518,733	-				+0.1
2,518,733	-				-0.2
2,518,733	-				-0.5
2,518,733	-				+0.3
2,518,733	-				+0.2
2,518,733	-				-0.7
2,518,733	-				+0.3
2,518,733	-				-3.0
2,518,736	+				+0.3
2,518,737	-				-0.4
2,518,737	-				+0.0
2,518,737	-				-0.5
2,518,737	-				+0.0
2,518,976	+				-0.5
2,518,976	+				-0.2
2,518,977	-				-0.6
2,519,031	+				+0.3
2,519,047	+				-0.5
2,519,047	+				-0.6
2,519,047	+				-0.5
2,519,079	-				-0.1
2,519,088	+				+0.7
2,519,116	+				+0.6
2,519,119	+				+0.3
2,519,256	+		PP_2212	0.11	-1.6
2,519,333	+				-0.2
2,519,333	+		PP_2212	0.13	-0.7
2,519,333	+		PP_2212	0.13	-0.3
2,519,333	+		PP_2212	0.13	-2.0
2,519,334	-		PP_2212	0.13	-0.8
2,519,506	+		PP_2212	0.17	-1.2
2,519,506	+		PP_2212	0.17	+1.0
2,519,656	-		PP_2212	0.20	+0.4
2,520,143	-		PP_2212	0.31	-0.2
2,520,229	+		PP_2212	0.33	-0.9
2,520,265	+		PP_2212	0.34	-0.4
2,520,360	-		PP_2212	0.36	-0.1
2,520,395	+		PP_2212	0.37	+0.2
2,520,396	-		PP_2212	0.37	-0.1
2,520,440	+		PP_2212	0.38	-1.2
2,520,441	-		PP_2212	0.38	-0.6
2,520,456	+		PP_2212	0.38	+0.1
2,520,750	-		PP_2212	0.45	-0.3
2,520,785	+		PP_2212	0.46	+0.0
2,520,785	+		PP_2212	0.46	+0.9
2,520,786	-		PP_2212	0.46	+0.2
2,520,786	-		PP_2212	0.46	-0.9
2,520,786	-		PP_2212	0.46	+0.5
2,520,795	-		PP_2212	0.46	-0.1
2,520,922	+		PP_2212	0.49	-0.1
2,520,923	-		PP_2212	0.49	-0.6
2,520,923	-		PP_2212	0.49	-0.6
2,520,938	-		PP_2212	0.49	-0.8
2,520,938	-		PP_2212	0.49	+0.2
2,520,978	+		PP_2212	0.50	-0.1
2,521,038	+		PP_2212	0.51	-0.2
2,521,039	-		PP_2212	0.51	+0.7
2,521,039	-		PP_2212	0.51	-1.4
2,521,083	-		PP_2212	0.52	+0.1
2,521,083	-		PP_2212	0.52	+0.5
2,521,083	-		PP_2212	0.52	+0.8
2,521,083	-		PP_2212	0.52	+0.3
2,521,115	-		PP_2212	0.53	-0.4
2,521,143	+		PP_2212	0.54	+0.2
2,521,164	+		PP_2212	0.54	-0.1
2,521,165	-		PP_2212	0.54	-0.8
2,521,165	-		PP_2212	0.54	+0.0
2,521,165	-		PP_2212	0.54	+0.5
2,521,433	+		PP_2212	0.60	+0.2
2,521,434	-		PP_2212	0.60	-0.3
2,521,553	+		PP_2212	0.63	-0.7
2,521,553	+		PP_2212	0.63	+0.0
2,521,553	+		PP_2212	0.63	-1.4
2,521,554	-		PP_2212	0.63	-1.1
2,521,561	+		PP_2212	0.63	+0.6
2,521,561	+		PP_2212	0.63	+0.3
2,521,562	-		PP_2212	0.63	-0.8
2,521,562	-		PP_2212	0.63	-1.0
2,521,562	-		PP_2212	0.63	-0.7
2,521,562	-		PP_2212	0.63	+0.4
2,521,753	-		PP_2212	0.68	-0.3
2,521,771	-		PP_2212	0.68	-1.0
2,521,771	-		PP_2212	0.68	+0.1
2,521,940	+		PP_2212	0.72	-0.5
2,521,941	-		PP_2212	0.72	+1.1
2,522,123	+		PP_2212	0.76	-1.4
2,522,191	+		PP_2212	0.77	+0.4
2,522,191	+		PP_2212	0.77	-0.6
2,522,191	+		PP_2212	0.77	+1.0
2,522,191	+		PP_2212	0.77	-0.1
2,522,192	-		PP_2212	0.77	+0.2
2,522,192	-		PP_2212	0.77	-1.0
2,522,192	-		PP_2212	0.77	-0.2
2,522,192	-		PP_2212	0.77	+0.5
2,522,257	+		PP_2212	0.79	-0.5
2,522,257	+		PP_2212	0.79	+0.5
2,522,258	-		PP_2212	0.79	+0.9
2,522,258	-		PP_2212	0.79	-0.4
2,522,258	-		PP_2212	0.79	+0.2
2,522,258	-				-0.5
2,522,258	-				+1.5
2,522,349	+		PP_2212	0.81	+0.3
2,522,462	-		PP_2212	0.83	-0.4
2,522,504	+		PP_2212	0.84	-0.9
2,522,521	-		PP_2212	0.85	-1.2
2,522,624	+		PP_2212	0.87	-1.3
2,522,738	-		PP_2212	0.90	-0.3
2,522,803	+				-0.9
2,522,803	+				-0.2
2,522,804	-				+0.6
2,522,848	+				+0.3
2,522,894	+				-0.3
2,523,029	-				+1.5
2,523,107	+				+0.3
2,523,108	-				-1.2
2,523,164	-				+0.2
2,523,327	+				-0.2
2,523,328	-				+0.5
2,523,401	+				-1.5
2,523,477	-		PP_2213	0.12	-0.2
2,523,489	+		PP_2213	0.12	-0.0
2,523,489	+		PP_2213	0.12	+0.4
2,523,490	-		PP_2213	0.13	-0.4
2,523,491	+		PP_2213	0.13	-1.6
2,523,492	-		PP_2213	0.13	-2.5
2,523,538	+		PP_2213	0.15	+0.8
2,523,554	-		PP_2213	0.16	+0.8
2,523,642	+		PP_2213	0.22	+0.2
2,523,642	+		PP_2213	0.22	+0.3
2,523,643	-		PP_2213	0.22	-0.5
2,523,838	+		PP_2213	0.33	+0.1
2,523,838	+		PP_2213	0.33	-0.2
2,523,838	+		PP_2213	0.33	+1.1
2,523,838	+		PP_2213	0.33	+0.3
2,523,839	-		PP_2213	0.33	-1.4
2,523,839	-		PP_2213	0.33	-0.1
2,523,839	-		PP_2213	0.33	-0.2
2,523,958	-		PP_2213	0.40	+0.4
2,524,035	+		PP_2213	0.45	-0.3
2,524,035	+		PP_2213	0.45	+0.2
2,524,036	-		PP_2213	0.45	+0.9
2,524,038	+		PP_2213	0.45	+0.5
2,524,038	+		PP_2213	0.45	+0.1
2,524,039	-		PP_2213	0.45	-2.8
2,524,039	-		PP_2213	0.45	+0.4
2,524,083	+		PP_2213	0.48	-0.0
2,524,083	+		PP_2213	0.48	+0.5
2,524,083	+		PP_2213	0.48	+0.8
2,524,083	+		PP_2213	0.48	+0.6
2,524,084	-		PP_2213	0.48	-2.1
2,524,084	-		PP_2213	0.48	-1.3
2,524,084	-		PP_2213	0.48	-0.2