Experiment: Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5451 and Atu5452 are separated by 295 nucleotides Atu5452 and Atu5453 overlap by 4 nucleotides Atu5453 and Atu5454 overlap by 11 nucleotides
Atu5451: Atu5451 - hypothetical protein, at 443,045 to 443,251
Atu5451
Atu5452: Atu5452 - ABC transporter nucleotide binding/ATPase, at 443,547 to 444,206
Atu5452
Atu5453: Atu5453 - ABC transporter membrane spanning protein, at 444,203 to 446,611
Atu5453
Atu5454: Atu5454 - hypothetical protein, at 446,601 to 447,665
Atu5454
Position (kb) 444
445
446
447 Strain fitness (log2 ratio) -1
0
1
2 at 443.254 kb on - strand at 443.427 kb on + strand at 443.446 kb on - strand at 443.455 kb on - strand at 443.460 kb on - strand at 443.519 kb on - strand at 443.553 kb on - strand at 443.617 kb on - strand, within Atu5452 at 443.690 kb on + strand, within Atu5452 at 443.700 kb on + strand, within Atu5452 at 443.707 kb on + strand, within Atu5452 at 443.715 kb on + strand, within Atu5452 at 443.717 kb on + strand, within Atu5452 at 443.728 kb on - strand, within Atu5452 at 443.776 kb on + strand, within Atu5452 at 443.784 kb on - strand, within Atu5452 at 443.794 kb on - strand, within Atu5452 at 443.953 kb on + strand, within Atu5452 at 444.021 kb on + strand, within Atu5452 at 444.021 kb on + strand, within Atu5452 at 444.021 kb on + strand, within Atu5452 at 444.244 kb on + strand at 444.279 kb on + strand at 444.356 kb on + strand at 444.356 kb on + strand at 444.364 kb on - strand at 444.418 kb on + strand at 444.432 kb on - strand at 444.450 kb on + strand, within Atu5453 at 444.458 kb on - strand, within Atu5453 at 444.479 kb on + strand, within Atu5453 at 444.479 kb on + strand, within Atu5453 at 444.648 kb on + strand, within Atu5453 at 444.656 kb on - strand, within Atu5453 at 444.656 kb on - strand, within Atu5453 at 444.656 kb on - strand, within Atu5453 at 444.656 kb on - strand, within Atu5453 at 444.736 kb on - strand, within Atu5453 at 444.819 kb on + strand, within Atu5453 at 444.848 kb on - strand, within Atu5453 at 444.867 kb on - strand, within Atu5453 at 444.895 kb on - strand, within Atu5453 at 444.917 kb on - strand, within Atu5453 at 444.970 kb on + strand, within Atu5453 at 444.970 kb on + strand, within Atu5453 at 444.970 kb on + strand, within Atu5453 at 444.970 kb on + strand, within Atu5453 at 444.976 kb on - strand, within Atu5453 at 444.978 kb on - strand, within Atu5453 at 444.978 kb on - strand, within Atu5453 at 445.073 kb on + strand, within Atu5453 at 445.073 kb on + strand, within Atu5453 at 445.073 kb on + strand, within Atu5453 at 445.073 kb on + strand, within Atu5453 at 445.073 kb on + strand, within Atu5453 at 445.078 kb on + strand, within Atu5453 at 445.078 kb on + strand, within Atu5453 at 445.081 kb on - strand, within Atu5453 at 445.081 kb on - strand, within Atu5453 at 445.085 kb on + strand, within Atu5453 at 445.085 kb on + strand, within Atu5453 at 445.085 kb on + strand, within Atu5453 at 445.093 kb on - strand, within Atu5453 at 445.093 kb on - strand, within Atu5453 at 445.100 kb on + strand, within Atu5453 at 445.190 kb on + strand, within Atu5453 at 445.215 kb on - strand, within Atu5453 at 445.251 kb on + strand, within Atu5453 at 445.254 kb on - strand, within Atu5453 at 445.282 kb on - strand, within Atu5453 at 445.285 kb on + strand, within Atu5453 at 445.289 kb on - strand, within Atu5453 at 445.290 kb on + strand, within Atu5453 at 445.293 kb on + strand, within Atu5453 at 445.463 kb on - strand, within Atu5453 at 445.470 kb on + strand, within Atu5453 at 445.470 kb on - strand, within Atu5453 at 445.604 kb on - strand, within Atu5453 at 445.668 kb on - strand, within Atu5453 at 445.692 kb on - strand, within Atu5453 at 445.700 kb on - strand, within Atu5453 at 445.897 kb on + strand, within Atu5453 at 445.905 kb on - strand, within Atu5453 at 445.905 kb on - strand, within Atu5453 at 446.059 kb on + strand, within Atu5453 at 446.061 kb on + strand, within Atu5453 at 446.204 kb on - strand, within Atu5453 at 446.206 kb on + strand, within Atu5453 at 446.218 kb on + strand, within Atu5453 at 446.352 kb on - strand, within Atu5453 at 446.406 kb on + strand at 446.411 kb on + strand at 446.416 kb on + strand at 446.416 kb on + strand at 446.416 kb on + strand at 446.424 kb on - strand at 446.424 kb on - strand at 446.437 kb on + strand at 446.584 kb on + strand at 446.592 kb on - strand at 446.625 kb on - strand at 446.669 kb on + strand at 446.708 kb on - strand, within Atu5454 at 446.780 kb on - strand, within Atu5454 at 446.804 kb on - strand, within Atu5454 at 446.894 kb on + strand, within Atu5454 at 446.904 kb on + strand, within Atu5454 at 446.941 kb on - strand, within Atu5454 at 446.958 kb on - strand, within Atu5454 at 446.965 kb on + strand, within Atu5454 at 446.965 kb on + strand, within Atu5454 at 446.965 kb on + strand, within Atu5454 at 447.037 kb on + strand, within Atu5454 at 447.068 kb on - strand, within Atu5454 at 447.084 kb on + strand, within Atu5454 at 447.119 kb on - strand, within Atu5454 at 447.128 kb on + strand, within Atu5454 at 447.271 kb on - strand, within Atu5454 at 447.286 kb on - strand, within Atu5454 at 447.314 kb on - strand, within Atu5454 at 447.333 kb on - strand, within Atu5454 at 447.381 kb on + strand, within Atu5454 at 447.488 kb on - strand, within Atu5454 at 447.501 kb on - strand, within Atu5454 at 447.569 kb on + strand at 447.603 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 443,254 - +1.6 443,427 + -0.6 443,446 - -0.3 443,455 - +0.3 443,460 - +2.1 443,519 - +0.2 443,553 - -0.4 443,617 - Atu5452 0.11 -1.0 443,690 + Atu5452 0.22 +0.2 443,700 + Atu5452 0.23 +1.8 443,707 + Atu5452 0.24 -1.0 443,715 + Atu5452 0.25 -0.6 443,717 + Atu5452 0.26 -1.0 443,728 - Atu5452 0.27 +0.2 443,776 + Atu5452 0.35 +1.5 443,784 - Atu5452 0.36 +0.2 443,794 - Atu5452 0.37 +0.4 443,953 + Atu5452 0.62 -0.6 444,021 + Atu5452 0.72 +0.8 444,021 + Atu5452 0.72 +0.1 444,021 + Atu5452 0.72 +0.0 444,244 + +0.1 444,279 + -0.4 444,356 + -0.1 444,356 + -0.1 444,364 - -0.7 444,418 + +0.3 444,432 - +0.7 444,450 + Atu5453 0.10 -0.1 444,458 - Atu5453 0.11 +0.6 444,479 + Atu5453 0.11 +1.8 444,479 + Atu5453 0.11 +0.6 444,648 + Atu5453 0.18 +0.2 444,656 - Atu5453 0.19 -0.1 444,656 - Atu5453 0.19 +1.3 444,656 - Atu5453 0.19 +1.3 444,656 - Atu5453 0.19 -0.7 444,736 - Atu5453 0.22 -0.4 444,819 + Atu5453 0.26 -0.3 444,848 - Atu5453 0.27 -0.5 444,867 - Atu5453 0.28 +1.2 444,895 - Atu5453 0.29 +0.1 444,917 - Atu5453 0.30 +1.0 444,970 + Atu5453 0.32 +0.3 444,970 + Atu5453 0.32 +1.2 444,970 + Atu5453 0.32 -0.3 444,970 + Atu5453 0.32 +0.5 444,976 - Atu5453 0.32 +0.0 444,978 - Atu5453 0.32 -0.2 444,978 - Atu5453 0.32 +0.7 445,073 + Atu5453 0.36 -1.2 445,073 + Atu5453 0.36 -1.7 445,073 + Atu5453 0.36 +0.2 445,073 + Atu5453 0.36 +0.0 445,073 + Atu5453 0.36 -0.9 445,078 + Atu5453 0.36 +0.3 445,078 + Atu5453 0.36 -0.1 445,081 - Atu5453 0.36 -0.7 445,081 - Atu5453 0.36 -0.9 445,085 + Atu5453 0.37 -0.1 445,085 + Atu5453 0.37 +0.6 445,085 + Atu5453 0.37 +0.2 445,093 - Atu5453 0.37 +1.6 445,093 - Atu5453 0.37 +0.4 445,100 + Atu5453 0.37 +0.0 445,190 + Atu5453 0.41 -0.7 445,215 - Atu5453 0.42 -0.9 445,251 + Atu5453 0.44 +0.4 445,254 - Atu5453 0.44 +1.4 445,282 - Atu5453 0.45 -0.2 445,285 + Atu5453 0.45 +0.1 445,289 - Atu5453 0.45 -0.1 445,290 + Atu5453 0.45 -0.4 445,293 + Atu5453 0.45 +0.3 445,463 - Atu5453 0.52 -0.3 445,470 + Atu5453 0.53 +0.3 445,470 - Atu5453 0.53 +2.0 445,604 - Atu5453 0.58 +0.8 445,668 - Atu5453 0.61 +0.8 445,692 - Atu5453 0.62 +0.5 445,700 - Atu5453 0.62 +0.3 445,897 + Atu5453 0.70 +1.3 445,905 - Atu5453 0.71 +0.6 445,905 - Atu5453 0.71 +0.2 446,059 + Atu5453 0.77 +0.6 446,061 + Atu5453 0.77 +2.7 446,204 - Atu5453 0.83 -0.4 446,206 + Atu5453 0.83 +0.5 446,218 + Atu5453 0.84 +0.0 446,352 - Atu5453 0.89 -0.3 446,406 + -0.3 446,411 + -1.1 446,416 + +0.2 446,416 + +1.3 446,416 + -0.2 446,424 - -0.0 446,424 - +1.1 446,437 + +1.0 446,584 + +0.6 446,592 - -0.1 446,625 - -0.0 446,669 + +0.2 446,708 - Atu5454 0.10 -0.5 446,780 - Atu5454 0.17 -0.3 446,804 - Atu5454 0.19 -0.5 446,894 + Atu5454 0.28 +0.1 446,904 + Atu5454 0.28 -0.2 446,941 - Atu5454 0.32 -0.2 446,958 - Atu5454 0.34 -1.1 446,965 + Atu5454 0.34 +0.1 446,965 + Atu5454 0.34 -0.2 446,965 + Atu5454 0.34 +0.0 447,037 + Atu5454 0.41 +0.7 447,068 - Atu5454 0.44 -0.0 447,084 + Atu5454 0.45 +0.8 447,119 - Atu5454 0.49 +1.0 447,128 + Atu5454 0.49 -0.7 447,271 - Atu5454 0.63 -0.5 447,286 - Atu5454 0.64 -0.1 447,314 - Atu5454 0.67 +0.2 447,333 - Atu5454 0.69 -0.2 447,381 + Atu5454 0.73 +0.1 447,488 - Atu5454 0.83 +1.2 447,501 - Atu5454 0.85 -0.6 447,569 + -0.4 447,603 - +1.2
Or see this region's nucleotide sequence