Experiment: Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5016 and Atu5017 are separated by 92 nucleotides Atu5017 and Atu5018 are separated by 34 nucleotides Atu5018 and Atu5019 are separated by 25 nucleotides Atu5019 and Atu5020 overlap by 4 nucleotides
Atu5016: Atu5016 - hypothetical protein, at 16,428 to 17,576
Atu5016
Atu5017: Atu5017 - hypothetical protein, at 17,669 to 18,349
Atu5017
Atu5018: Atu5018 - hypothetical protein, at 18,384 to 19,208
Atu5018
Atu5019: Atu5019 - hypothetical protein, at 19,234 to 20,004
Atu5019
Atu5020: Atu5020 - hypothetical protein, at 20,001 to 21,335
Atu5020
Position (kb) 18
19
20 Strain fitness (log2 ratio) -1
0
1
2
3 at 17.431 kb on - strand, within Atu5016 at 17.445 kb on + strand, within Atu5016 at 17.490 kb on - strand at 17.524 kb on + strand at 17.524 kb on + strand at 17.524 kb on + strand at 17.532 kb on - strand at 17.537 kb on + strand at 17.547 kb on + strand at 17.596 kb on + strand at 17.599 kb on + strand at 17.688 kb on - strand at 17.689 kb on - strand at 17.706 kb on + strand at 17.714 kb on - strand at 17.721 kb on + strand at 17.721 kb on + strand at 17.783 kb on - strand, within Atu5017 at 17.869 kb on + strand, within Atu5017 at 17.911 kb on - strand, within Atu5017 at 17.927 kb on + strand, within Atu5017 at 17.998 kb on - strand, within Atu5017 at 18.010 kb on - strand, within Atu5017 at 18.019 kb on + strand, within Atu5017 at 18.027 kb on - strand, within Atu5017 at 18.027 kb on - strand, within Atu5017 at 18.055 kb on - strand, within Atu5017 at 18.057 kb on + strand, within Atu5017 at 18.057 kb on + strand, within Atu5017 at 18.067 kb on + strand, within Atu5017 at 18.067 kb on + strand, within Atu5017 at 18.072 kb on + strand, within Atu5017 at 18.075 kb on - strand, within Atu5017 at 18.081 kb on - strand, within Atu5017 at 18.096 kb on + strand, within Atu5017 at 18.105 kb on + strand, within Atu5017 at 18.120 kb on + strand, within Atu5017 at 18.243 kb on + strand, within Atu5017 at 18.243 kb on + strand, within Atu5017 at 18.243 kb on + strand, within Atu5017 at 18.251 kb on - strand, within Atu5017 at 18.297 kb on - strand at 18.346 kb on - strand at 18.409 kb on + strand at 18.409 kb on - strand at 18.417 kb on - strand at 18.417 kb on - strand at 18.428 kb on + strand at 18.429 kb on - strand at 18.515 kb on - strand, within Atu5018 at 18.518 kb on - strand, within Atu5018 at 18.521 kb on + strand, within Atu5018 at 18.529 kb on - strand, within Atu5018 at 18.543 kb on + strand, within Atu5018 at 18.595 kb on + strand, within Atu5018 at 18.629 kb on - strand, within Atu5018 at 18.716 kb on + strand, within Atu5018 at 18.723 kb on + strand, within Atu5018 at 18.867 kb on + strand, within Atu5018 at 18.872 kb on + strand, within Atu5018 at 18.875 kb on - strand, within Atu5018 at 18.959 kb on + strand, within Atu5018 at 18.978 kb on - strand, within Atu5018 at 18.979 kb on - strand, within Atu5018 at 18.980 kb on + strand, within Atu5018 at 19.013 kb on + strand, within Atu5018 at 19.061 kb on - strand, within Atu5018 at 19.074 kb on + strand, within Atu5018 at 19.162 kb on + strand at 19.170 kb on - strand at 19.293 kb on - strand at 19.330 kb on - strand, within Atu5019 at 19.467 kb on + strand, within Atu5019 at 19.468 kb on + strand, within Atu5019 at 19.494 kb on + strand, within Atu5019 at 19.631 kb on - strand, within Atu5019 at 19.653 kb on - strand, within Atu5019 at 19.653 kb on - strand, within Atu5019 at 19.655 kb on + strand, within Atu5019 at 19.665 kb on + strand, within Atu5019 at 19.673 kb on - strand, within Atu5019 at 19.673 kb on - strand, within Atu5019 at 19.703 kb on + strand, within Atu5019 at 19.711 kb on - strand, within Atu5019 at 19.718 kb on - strand, within Atu5019 at 19.723 kb on + strand, within Atu5019 at 19.739 kb on - strand, within Atu5019 at 19.784 kb on - strand, within Atu5019 at 19.849 kb on - strand, within Atu5019 at 19.871 kb on + strand, within Atu5019 at 19.912 kb on - strand, within Atu5019 at 19.936 kb on - strand at 19.970 kb on + strand at 19.977 kb on + strand at 19.982 kb on + strand at 19.990 kb on - strand at 19.992 kb on + strand at 20.039 kb on + strand at 20.047 kb on - strand at 20.047 kb on - strand at 20.047 kb on - strand at 20.098 kb on + strand at 20.106 kb on - strand at 20.124 kb on + strand at 20.158 kb on + strand, within Atu5020 at 20.158 kb on + strand, within Atu5020 at 20.166 kb on - strand, within Atu5020 at 20.186 kb on - strand, within Atu5020
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 17,431 - Atu5016 0.87 +0.0 17,445 + Atu5016 0.89 +0.3 17,490 - +0.9 17,524 + +0.1 17,524 + +0.4 17,524 + +1.1 17,532 - +3.0 17,537 + -0.6 17,547 + -0.1 17,596 + +0.9 17,599 + -0.2 17,688 - -0.8 17,689 - -0.4 17,706 + -0.3 17,714 - -1.3 17,721 + +0.6 17,721 + -0.6 17,783 - Atu5017 0.17 +0.1 17,869 + Atu5017 0.29 -0.6 17,911 - Atu5017 0.36 +0.1 17,927 + Atu5017 0.38 -1.0 17,998 - Atu5017 0.48 +0.8 18,010 - Atu5017 0.50 +1.2 18,019 + Atu5017 0.51 +0.1 18,027 - Atu5017 0.53 +0.1 18,027 - Atu5017 0.53 -0.0 18,055 - Atu5017 0.57 -0.6 18,057 + Atu5017 0.57 -0.1 18,057 + Atu5017 0.57 +0.2 18,067 + Atu5017 0.58 -0.5 18,067 + Atu5017 0.58 -0.1 18,072 + Atu5017 0.59 +1.7 18,075 - Atu5017 0.60 +0.7 18,081 - Atu5017 0.60 +0.4 18,096 + Atu5017 0.63 -0.4 18,105 + Atu5017 0.64 +0.6 18,120 + Atu5017 0.66 -0.0 18,243 + Atu5017 0.84 -0.2 18,243 + Atu5017 0.84 -0.3 18,243 + Atu5017 0.84 +0.6 18,251 - Atu5017 0.85 +0.0 18,297 - -0.5 18,346 - +0.8 18,409 + -0.2 18,409 - -0.2 18,417 - -0.4 18,417 - -0.4 18,428 + +0.1 18,429 - +0.6 18,515 - Atu5018 0.16 -0.4 18,518 - Atu5018 0.16 -0.1 18,521 + Atu5018 0.17 -0.2 18,529 - Atu5018 0.18 -0.8 18,543 + Atu5018 0.19 +0.5 18,595 + Atu5018 0.26 -0.2 18,629 - Atu5018 0.30 -0.3 18,716 + Atu5018 0.40 -0.9 18,723 + Atu5018 0.41 +0.1 18,867 + Atu5018 0.59 +0.2 18,872 + Atu5018 0.59 +0.7 18,875 - Atu5018 0.60 +0.1 18,959 + Atu5018 0.70 +0.0 18,978 - Atu5018 0.72 -0.8 18,979 - Atu5018 0.72 -0.2 18,980 + Atu5018 0.72 -0.4 19,013 + Atu5018 0.76 -1.4 19,061 - Atu5018 0.82 -0.4 19,074 + Atu5018 0.84 -0.5 19,162 + -0.4 19,170 - +0.3 19,293 - +0.1 19,330 - Atu5019 0.12 -0.0 19,467 + Atu5019 0.30 +1.1 19,468 + Atu5019 0.30 -1.0 19,494 + Atu5019 0.34 +0.0 19,631 - Atu5019 0.51 -0.9 19,653 - Atu5019 0.54 -0.5 19,653 - Atu5019 0.54 -0.8 19,655 + Atu5019 0.55 -1.0 19,665 + Atu5019 0.56 +0.0 19,673 - Atu5019 0.57 -0.1 19,673 - Atu5019 0.57 -0.7 19,703 + Atu5019 0.61 -0.6 19,711 - Atu5019 0.62 -0.7 19,718 - Atu5019 0.63 -0.2 19,723 + Atu5019 0.63 -0.1 19,739 - Atu5019 0.65 -1.6 19,784 - Atu5019 0.71 +0.4 19,849 - Atu5019 0.80 -0.7 19,871 + Atu5019 0.83 +0.6 19,912 - Atu5019 0.88 -0.0 19,936 - -0.3 19,970 + +0.7 19,977 + +0.5 19,982 + -0.0 19,990 - -0.0 19,992 + +0.0 20,039 + +0.1 20,047 - +0.8 20,047 - -0.4 20,047 - +0.9 20,098 + -0.5 20,106 - -0.8 20,124 + -1.2 20,158 + Atu5020 0.12 -0.0 20,158 + Atu5020 0.12 -1.2 20,166 - Atu5020 0.12 +2.0 20,186 - Atu5020 0.14 +0.3
Or see this region's nucleotide sequence