Experiment: phage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ygcN and ygcO overlap by 10 nucleotides ygcO and ygcP are separated by 16 nucleotides ygcP and ygcQ are separated by 147 nucleotides
b2766: ygcN - orf, hypothetical protein (VIMSS), at 2,890,679 to 2,891,950
ygcN
b2767: ygcO - orf, hypothetical protein (VIMSS), at 2,891,941 to 2,892,201
ygcO
b2768: ygcP - predicted anti-terminator regulatory protein (NCBI), at 2,892,218 to 2,892,793
ygcP
b2769: ygcQ - putative flavoprotein (VIMSS), at 2,892,941 to 2,893,801
ygcQ
Position (kb)
2892
2893 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2891.343 kb on - strand, within ygcN at 2891.343 kb on - strand, within ygcN at 2891.389 kb on - strand, within ygcN at 2891.482 kb on + strand, within ygcN at 2891.521 kb on + strand, within ygcN at 2891.664 kb on + strand, within ygcN at 2891.702 kb on + strand, within ygcN at 2891.707 kb on + strand, within ygcN at 2891.722 kb on - strand, within ygcN at 2891.788 kb on + strand, within ygcN at 2891.793 kb on - strand, within ygcN at 2891.793 kb on - strand, within ygcN at 2891.853 kb on - strand at 2891.855 kb on - strand at 2891.912 kb on - strand at 2891.943 kb on - strand at 2891.959 kb on + strand at 2892.096 kb on + strand, within ygcO at 2892.100 kb on + strand, within ygcO at 2892.100 kb on + strand, within ygcO at 2892.106 kb on + strand, within ygcO at 2892.108 kb on + strand, within ygcO at 2892.110 kb on - strand, within ygcO at 2892.110 kb on - strand, within ygcO at 2892.127 kb on + strand, within ygcO at 2892.132 kb on - strand, within ygcO at 2892.143 kb on + strand, within ygcO at 2892.143 kb on + strand, within ygcO at 2892.151 kb on - strand, within ygcO at 2892.151 kb on - strand, within ygcO at 2892.151 kb on - strand, within ygcO at 2892.151 kb on - strand, within ygcO at 2892.192 kb on - strand at 2892.224 kb on + strand at 2892.230 kb on + strand at 2892.230 kb on + strand at 2892.279 kb on - strand, within ygcP at 2892.288 kb on + strand, within ygcP at 2892.342 kb on - strand, within ygcP at 2892.476 kb on + strand, within ygcP at 2892.601 kb on + strand, within ygcP at 2892.616 kb on - strand, within ygcP at 2892.699 kb on + strand, within ygcP at 2892.753 kb on - strand at 2892.758 kb on + strand at 2892.758 kb on + strand at 2892.854 kb on - strand at 2892.888 kb on - strand at 2892.888 kb on - strand at 2892.914 kb on - strand at 2892.914 kb on - strand at 2892.914 kb on - strand at 2892.939 kb on + strand at 2892.973 kb on - strand at 2892.993 kb on - strand at 2893.003 kb on - strand at 2893.184 kb on + strand, within ygcQ at 2893.195 kb on - strand, within ygcQ at 2893.279 kb on - strand, within ygcQ at 2893.284 kb on - strand, within ygcQ at 2893.368 kb on - strand, within ygcQ at 2893.552 kb on + strand, within ygcQ at 2893.566 kb on - strand, within ygcQ at 2893.636 kb on - strand, within ygcQ at 2893.657 kb on - strand, within ygcQ at 2893.717 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage remove 2,891,343 - ygcN b2766 0.52 +0.4 2,891,343 - ygcN b2766 0.52 -0.5 2,891,389 - ygcN b2766 0.56 +0.9 2,891,482 + ygcN b2766 0.63 -0.9 2,891,521 + ygcN b2766 0.66 -0.5 2,891,664 + ygcN b2766 0.77 +0.0 2,891,702 + ygcN b2766 0.80 -2.5 2,891,707 + ygcN b2766 0.81 +0.7 2,891,722 - ygcN b2766 0.82 -0.8 2,891,788 + ygcN b2766 0.87 -0.5 2,891,793 - ygcN b2766 0.88 +0.6 2,891,793 - ygcN b2766 0.88 -2.3 2,891,853 - +1.7 2,891,855 - -0.4 2,891,912 - -1.0 2,891,943 - +1.0 2,891,959 + +0.4 2,892,096 + ygcO b2767 0.59 -2.1 2,892,100 + ygcO b2767 0.61 -0.7 2,892,100 + ygcO b2767 0.61 +0.7 2,892,106 + ygcO b2767 0.63 +0.4 2,892,108 + ygcO b2767 0.64 -1.0 2,892,110 - ygcO b2767 0.65 -0.8 2,892,110 - ygcO b2767 0.65 -2.2 2,892,127 + ygcO b2767 0.71 -2.2 2,892,132 - ygcO b2767 0.73 -0.3 2,892,143 + ygcO b2767 0.77 -0.5 2,892,143 + ygcO b2767 0.77 -0.1 2,892,151 - ygcO b2767 0.80 -0.4 2,892,151 - ygcO b2767 0.80 -2.8 2,892,151 - ygcO b2767 0.80 -1.6 2,892,151 - ygcO b2767 0.80 -0.3 2,892,192 - -0.2 2,892,224 + -1.5 2,892,230 + -0.2 2,892,230 + -0.9 2,892,279 - ygcP b2768 0.11 -1.1 2,892,288 + ygcP b2768 0.12 -2.0 2,892,342 - ygcP b2768 0.22 -0.6 2,892,476 + ygcP b2768 0.45 -2.4 2,892,601 + ygcP b2768 0.66 -2.3 2,892,616 - ygcP b2768 0.69 -1.4 2,892,699 + ygcP b2768 0.84 +0.1 2,892,753 - +1.9 2,892,758 + -0.9 2,892,758 + -0.2 2,892,854 - -0.0 2,892,888 - +0.9 2,892,888 - +0.4 2,892,914 - -1.4 2,892,914 - -2.1 2,892,914 - +0.2 2,892,939 + -0.7 2,892,973 - +1.6 2,892,993 - +0.1 2,893,003 - -1.4 2,893,184 + ygcQ b2769 0.28 -0.4 2,893,195 - ygcQ b2769 0.30 +0.3 2,893,279 - ygcQ b2769 0.39 -0.3 2,893,284 - ygcQ b2769 0.40 -0.1 2,893,368 - ygcQ b2769 0.50 -0.1 2,893,552 + ygcQ b2769 0.71 -0.3 2,893,566 - ygcQ b2769 0.73 +0.8 2,893,636 - ygcQ b2769 0.81 +0.4 2,893,657 - ygcQ b2769 0.83 -0.4 2,893,717 + +0.3
Or see this region's nucleotide sequence