Experiment: Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3266 and Atu3267 are separated by 1 nucleotides Atu3267 and Atu3268 overlap by 1 nucleotides Atu3268 and Atu3269 are separated by 362 nucleotides
Atu3266: Atu3266 - dihydroorotase, at 284,917 to 286,140
Atu3266
Atu3267: Atu3267 - dipeptide ABC transporter permease, at 286,142 to 287,017
Atu3267
Atu3268: Atu3268 - dipeptide ABC transporter permease, at 287,017 to 287,925
Atu3268
Atu3269: Atu3269 - dipeptide ABC transporter substrate-binding protein, at 288,288 to 289,814
Atu3269
Position (kb) 287
288 Strain fitness (log2 ratio) -1
0
1
2 at 286.095 kb on - strand at 286.123 kb on - strand at 286.138 kb on - strand at 286.149 kb on + strand at 286.159 kb on + strand at 286.159 kb on + strand at 286.161 kb on + strand at 286.167 kb on - strand at 286.167 kb on - strand at 286.167 kb on - strand at 286.167 kb on - strand at 286.178 kb on - strand at 286.328 kb on - strand, within Atu3267 at 286.417 kb on + strand, within Atu3267 at 286.436 kb on + strand, within Atu3267 at 286.498 kb on + strand, within Atu3267 at 286.780 kb on - strand, within Atu3267 at 286.900 kb on + strand, within Atu3267 at 286.964 kb on + strand at 287.028 kb on + strand at 287.142 kb on - strand, within Atu3268 at 287.385 kb on + strand, within Atu3268 at 287.508 kb on + strand, within Atu3268 at 287.680 kb on + strand, within Atu3268 at 287.688 kb on + strand, within Atu3268 at 287.688 kb on - strand, within Atu3268 at 287.688 kb on - strand, within Atu3268 at 287.696 kb on - strand, within Atu3268 at 287.753 kb on + strand, within Atu3268 at 287.772 kb on + strand, within Atu3268 at 287.792 kb on - strand, within Atu3268 at 287.797 kb on - strand, within Atu3268 at 287.880 kb on + strand at 288.091 kb on + strand at 288.189 kb on - strand at 288.285 kb on + strand at 288.349 kb on - strand at 288.503 kb on + strand, within Atu3269 at 288.599 kb on + strand, within Atu3269 at 288.604 kb on + strand, within Atu3269 at 288.620 kb on + strand, within Atu3269 at 288.620 kb on + strand, within Atu3269 at 288.625 kb on + strand, within Atu3269 at 288.627 kb on + strand, within Atu3269 at 288.789 kb on - strand, within Atu3269
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 286,095 - +0.1 286,123 - -0.6 286,138 - +0.5 286,149 + -1.3 286,159 + -0.5 286,159 + +0.7 286,161 + +0.7 286,167 - -0.1 286,167 - -1.6 286,167 - +1.5 286,167 - +0.0 286,178 - -0.1 286,328 - Atu3267 0.21 +0.7 286,417 + Atu3267 0.31 -0.2 286,436 + Atu3267 0.34 -0.1 286,498 + Atu3267 0.41 +1.0 286,780 - Atu3267 0.73 +0.1 286,900 + Atu3267 0.87 -0.6 286,964 + +0.0 287,028 + -0.3 287,142 - Atu3268 0.14 +1.6 287,385 + Atu3268 0.40 +0.0 287,508 + Atu3268 0.54 -0.5 287,680 + Atu3268 0.73 -0.4 287,688 + Atu3268 0.74 -0.7 287,688 - Atu3268 0.74 +1.5 287,688 - Atu3268 0.74 +0.4 287,696 - Atu3268 0.75 +0.5 287,753 + Atu3268 0.81 +0.7 287,772 + Atu3268 0.83 +2.1 287,792 - Atu3268 0.85 +1.9 287,797 - Atu3268 0.86 +0.7 287,880 + +0.2 288,091 + +0.5 288,189 - -1.5 288,285 + -0.5 288,349 - -0.1 288,503 + Atu3269 0.14 +1.8 288,599 + Atu3269 0.20 +0.1 288,604 + Atu3269 0.21 +0.6 288,620 + Atu3269 0.22 +0.1 288,620 + Atu3269 0.22 -0.1 288,625 + Atu3269 0.22 +0.2 288,627 + Atu3269 0.22 -0.4 288,789 - Atu3269 0.33 +1.6
Or see this region's nucleotide sequence