Experiment: Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0238 and Atu0239 overlap by 4 nucleotides Atu0239 and Atu0240 overlap by 26 nucleotides Atu0240 and Atu0241 are separated by 67 nucleotides
Atu0238: Atu0238 - oxidoreductase, at 237,803 to 238,696
Atu0238
Atu0239: Atu0239 - transcriptional regulator, AraC family, at 238,693 to 239,589
Atu0239
Atu0240: Atu0240 - hypothetical protein, at 239,564 to 239,971
Atu0240
Atu0241: Atu0241 - GTP-binding protein LepA, at 240,039 to 241,865
Atu0241
Position (kb) 238
239
240 Strain fitness (log2 ratio) -1
0
1 at 238.018 kb on + strand, within Atu0238 at 238.029 kb on + strand, within Atu0238 at 238.033 kb on - strand, within Atu0238 at 238.056 kb on + strand, within Atu0238 at 238.059 kb on - strand, within Atu0238 at 238.110 kb on + strand, within Atu0238 at 238.126 kb on + strand, within Atu0238 at 238.134 kb on + strand, within Atu0238 at 238.184 kb on + strand, within Atu0238 at 238.315 kb on + strand, within Atu0238 at 238.437 kb on + strand, within Atu0238 at 238.514 kb on + strand, within Atu0238 at 238.631 kb on - strand at 238.695 kb on + strand at 238.708 kb on + strand at 238.880 kb on - strand, within Atu0239 at 238.935 kb on + strand, within Atu0239 at 238.943 kb on - strand, within Atu0239 at 238.993 kb on + strand, within Atu0239 at 239.001 kb on - strand, within Atu0239 at 239.051 kb on + strand, within Atu0239 at 239.099 kb on - strand, within Atu0239 at 239.194 kb on + strand, within Atu0239 at 239.223 kb on + strand, within Atu0239 at 239.231 kb on - strand, within Atu0239 at 239.235 kb on - strand, within Atu0239 at 239.461 kb on + strand, within Atu0239 at 239.461 kb on + strand, within Atu0239 at 239.464 kb on - strand, within Atu0239 at 239.509 kb on + strand at 239.512 kb on - strand at 239.660 kb on - strand, within Atu0240 at 239.761 kb on - strand, within Atu0240 at 239.820 kb on - strand, within Atu0240 at 239.820 kb on - strand, within Atu0240 at 239.952 kb on - strand at 240.010 kb on + strand at 240.018 kb on - strand at 240.018 kb on - strand at 240.454 kb on + strand, within Atu0241
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 238,018 + Atu0238 0.24 +0.3 238,029 + Atu0238 0.25 -1.3 238,033 - Atu0238 0.26 +0.4 238,056 + Atu0238 0.28 -0.0 238,059 - Atu0238 0.29 -0.3 238,110 + Atu0238 0.34 -0.4 238,126 + Atu0238 0.36 -0.7 238,134 + Atu0238 0.37 -0.2 238,184 + Atu0238 0.43 +0.0 238,315 + Atu0238 0.57 -0.3 238,437 + Atu0238 0.71 +1.4 238,514 + Atu0238 0.80 +0.0 238,631 - +0.8 238,695 + -0.5 238,708 + -0.2 238,880 - Atu0239 0.21 +0.3 238,935 + Atu0239 0.27 +1.1 238,943 - Atu0239 0.28 +0.0 238,993 + Atu0239 0.33 +0.5 239,001 - Atu0239 0.34 +0.3 239,051 + Atu0239 0.40 +0.0 239,099 - Atu0239 0.45 -0.2 239,194 + Atu0239 0.56 +0.5 239,223 + Atu0239 0.59 +0.5 239,231 - Atu0239 0.60 +0.1 239,235 - Atu0239 0.60 +0.3 239,461 + Atu0239 0.86 +0.1 239,461 + Atu0239 0.86 +1.4 239,464 - Atu0239 0.86 +0.0 239,509 + +0.3 239,512 - +0.3 239,660 - Atu0240 0.24 -0.2 239,761 - Atu0240 0.48 -0.8 239,820 - Atu0240 0.63 -0.9 239,820 - Atu0240 0.63 +0.0 239,952 - +0.2 240,010 + +0.6 240,018 - -0.8 240,018 - +0.2 240,454 + Atu0241 0.23 -0.6
Or see this region's nucleotide sequence