Strain Fitness in Pseudomonas putida KT2440 around PP_0527

Experiment: 1,2-Propanediol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0526 and PP_0527 are separated by 216 nucleotidesPP_0527 and PP_0528 are separated by 177 nucleotides PP_0526: PP_0526 - transposase, at 611,104 to 612,069 _0526 PP_0527: PP_0527 - 1-deoxyxylulose-5-phosphate synthase, at 612,286 to 614,181 _0527 PP_0528: PP_0528 - farnesyl diphosphate synthase, at 614,359 to 615,246 _0528 Position (kb) 612 613 614 615Strain fitness (log2 ratio) -1 0 1at 612.209 kb on + strandat 612.219 kb on + strandat 612.219 kb on + strandat 612.258 kb on + strandat 612.288 kb on - strandat 614.195 kb on - strandat 614.195 kb on - strandat 614.197 kb on - strandat 614.197 kb on - strandat 614.197 kb on - strandat 614.197 kb on - strandat 614.273 kb on - strandat 614.273 kb on - strandat 614.273 kb on - strandat 614.339 kb on - strandat 614.339 kb on - strandat 614.346 kb on + strandat 614.346 kb on + strandat 614.347 kb on - strandat 614.347 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1,2-Propanediol (C)
remove
612,209 + -0.3
612,219 + +0.1
612,219 + +0.2
612,258 + +0.3
612,288 - +0.5
614,195 - +1.0
614,195 - +0.5
614,197 - +0.3
614,197 - +1.2
614,197 - -1.4
614,197 - +0.0
614,273 - -0.0
614,273 - +1.0
614,273 - +1.1
614,339 - -0.3
614,339 - -0.9
614,346 + +0.5
614,346 + -0.1
614,347 - -0.1
614,347 - -0.3

Or see this region's nucleotide sequence