Experiment: Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3684 and Atu3685 are separated by 14 nucleotides Atu3685 and Atu3686 are separated by 27 nucleotides Atu3686 and Atu3687 are separated by 133 nucleotides
Atu3684: Atu3684 - siderophore biosynthesis protein, at 757,414 to 759,081
Atu3684
Atu3685: Atu3685 - thioesterase, siderophore biosynthesis protein, at 759,096 to 759,842
Atu3685
Atu3686: Atu3686 - siderophore biosynthesis protein, at 759,870 to 760,763
Atu3686
Atu3687: Atu3687 - TonB-dependent receptor, at 760,897 to 763,335
Atu3687
Position (kb) 759
760
761 Strain fitness (log2 ratio) -2
-1
0
1 at 758.872 kb on + strand, within Atu3684 at 758.877 kb on + strand, within Atu3684 at 758.877 kb on + strand, within Atu3684 at 759.260 kb on - strand, within Atu3685 at 759.260 kb on - strand, within Atu3685 at 759.267 kb on - strand, within Atu3685 at 759.306 kb on + strand, within Atu3685 at 759.307 kb on + strand, within Atu3685 at 759.315 kb on - strand, within Atu3685 at 759.448 kb on + strand, within Atu3685 at 759.456 kb on - strand, within Atu3685 at 759.536 kb on + strand, within Atu3685 at 759.638 kb on - strand, within Atu3685 at 759.649 kb on + strand, within Atu3685 at 759.724 kb on + strand, within Atu3685 at 759.758 kb on - strand, within Atu3685 at 759.807 kb on + strand at 759.812 kb on + strand at 759.812 kb on + strand at 759.822 kb on + strand at 759.886 kb on + strand at 759.948 kb on - strand at 759.966 kb on - strand, within Atu3686 at 760.091 kb on - strand, within Atu3686 at 760.112 kb on - strand, within Atu3686 at 760.208 kb on + strand, within Atu3686 at 760.208 kb on + strand, within Atu3686 at 760.216 kb on - strand, within Atu3686 at 760.323 kb on + strand, within Atu3686 at 760.350 kb on - strand, within Atu3686 at 760.376 kb on - strand, within Atu3686 at 760.503 kb on - strand, within Atu3686 at 760.511 kb on + strand, within Atu3686 at 760.657 kb on + strand, within Atu3686 at 760.667 kb on - strand, within Atu3686 at 760.688 kb on - strand at 760.728 kb on - strand at 760.941 kb on + strand at 760.949 kb on + strand at 760.949 kb on + strand at 760.949 kb on + strand at 760.949 kb on + strand at 760.949 kb on - strand at 760.957 kb on - strand at 761.008 kb on + strand at 761.008 kb on + strand at 761.016 kb on - strand at 761.016 kb on - strand at 761.016 kb on - strand at 761.020 kb on + strand at 761.065 kb on + strand at 761.176 kb on - strand, within Atu3687 at 761.188 kb on - strand, within Atu3687 at 761.255 kb on + strand, within Atu3687 at 761.263 kb on - strand, within Atu3687 at 761.313 kb on - strand, within Atu3687 at 761.395 kb on - strand, within Atu3687 at 761.412 kb on + strand, within Atu3687 at 761.412 kb on + strand, within Atu3687 at 761.420 kb on - strand, within Atu3687 at 761.432 kb on + strand, within Atu3687 at 761.440 kb on - strand, within Atu3687 at 761.452 kb on + strand, within Atu3687 at 761.479 kb on + strand, within Atu3687 at 761.530 kb on + strand, within Atu3687 at 761.542 kb on + strand, within Atu3687 at 761.616 kb on + strand, within Atu3687 at 761.662 kb on + strand, within Atu3687 at 761.662 kb on + strand, within Atu3687 at 761.662 kb on + strand, within Atu3687 at 761.662 kb on + strand, within Atu3687 at 761.670 kb on - strand, within Atu3687 at 761.670 kb on - strand, within Atu3687 at 761.670 kb on - strand, within Atu3687
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 758,872 + Atu3684 0.87 +1.7 758,877 + Atu3684 0.88 -1.6 758,877 + Atu3684 0.88 +0.1 759,260 - Atu3685 0.22 -0.3 759,260 - Atu3685 0.22 -0.4 759,267 - Atu3685 0.23 +0.0 759,306 + Atu3685 0.28 -0.2 759,307 + Atu3685 0.28 -1.4 759,315 - Atu3685 0.29 +0.5 759,448 + Atu3685 0.47 +0.4 759,456 - Atu3685 0.48 -0.2 759,536 + Atu3685 0.59 +0.2 759,638 - Atu3685 0.73 -0.0 759,649 + Atu3685 0.74 +0.4 759,724 + Atu3685 0.84 -0.2 759,758 - Atu3685 0.89 +1.1 759,807 + -0.4 759,812 + -0.2 759,812 + -0.2 759,822 + -2.4 759,886 + -0.2 759,948 - -0.5 759,966 - Atu3686 0.11 -1.1 760,091 - Atu3686 0.25 +0.0 760,112 - Atu3686 0.27 +0.9 760,208 + Atu3686 0.38 +0.0 760,208 + Atu3686 0.38 -0.5 760,216 - Atu3686 0.39 +0.2 760,323 + Atu3686 0.51 +0.4 760,350 - Atu3686 0.54 -0.4 760,376 - Atu3686 0.57 +0.1 760,503 - Atu3686 0.71 +0.3 760,511 + Atu3686 0.72 -0.2 760,657 + Atu3686 0.88 +0.6 760,667 - Atu3686 0.89 -1.8 760,688 - -1.4 760,728 - -0.6 760,941 + -1.0 760,949 + -0.6 760,949 + +0.2 760,949 + -0.3 760,949 + +0.1 760,949 - +0.2 760,957 - +0.6 761,008 + -0.5 761,008 + -0.0 761,016 - -0.1 761,016 - -0.1 761,016 - -1.9 761,020 + +0.7 761,065 + -0.3 761,176 - Atu3687 0.11 -0.5 761,188 - Atu3687 0.12 -0.4 761,255 + Atu3687 0.15 -1.2 761,263 - Atu3687 0.15 +0.6 761,313 - Atu3687 0.17 -0.4 761,395 - Atu3687 0.20 -0.8 761,412 + Atu3687 0.21 +1.2 761,412 + Atu3687 0.21 -0.2 761,420 - Atu3687 0.21 -1.0 761,432 + Atu3687 0.22 -0.7 761,440 - Atu3687 0.22 -0.3 761,452 + Atu3687 0.23 -0.2 761,479 + Atu3687 0.24 -0.3 761,530 + Atu3687 0.26 +0.1 761,542 + Atu3687 0.26 +0.4 761,616 + Atu3687 0.29 +0.7 761,662 + Atu3687 0.31 +0.0 761,662 + Atu3687 0.31 -0.7 761,662 + Atu3687 0.31 +0.1 761,662 + Atu3687 0.31 -0.3 761,670 - Atu3687 0.32 -0.2 761,670 - Atu3687 0.32 -0.4 761,670 - Atu3687 0.32 +0.2
Or see this region's nucleotide sequence