Experiment: Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3494 and Atu3495 are separated by 161 nucleotides Atu3495 and Atu3496 are separated by 9 nucleotides Atu3496 and Atu3497 are separated by 180 nucleotides
Atu3494: Atu3494 - hypothetical protein, at 545,112 to 545,807
Atu3494
Atu3495: Atu3495 - diguanylate cyclase, at 545,969 to 547,903
Atu3495
Atu3496: Atu3496 - hypothetical protein, at 547,913 to 548,419
Atu3496
Atu3497: Atu3497 - hypothetical protein, at 548,600 to 548,947
Atu3497
Position (kb) 545
546
547
548 Strain fitness (log2 ratio) -2
-1
0
1 at 544.970 kb on + strand at 544.985 kb on - strand at 545.117 kb on - strand at 545.197 kb on + strand, within Atu3494 at 545.220 kb on - strand, within Atu3494 at 545.256 kb on - strand, within Atu3494 at 545.361 kb on - strand, within Atu3494 at 545.422 kb on + strand, within Atu3494 at 545.427 kb on + strand, within Atu3494 at 545.435 kb on - strand, within Atu3494 at 545.473 kb on + strand, within Atu3494 at 545.489 kb on + strand, within Atu3494 at 545.675 kb on + strand, within Atu3494 at 545.738 kb on + strand at 545.749 kb on + strand at 545.777 kb on + strand at 546.076 kb on - strand at 546.203 kb on - strand, within Atu3495 at 546.203 kb on - strand, within Atu3495 at 546.243 kb on - strand, within Atu3495 at 546.410 kb on - strand, within Atu3495 at 546.415 kb on + strand, within Atu3495 at 546.415 kb on + strand, within Atu3495 at 546.892 kb on + strand, within Atu3495 at 546.892 kb on + strand, within Atu3495 at 546.892 kb on + strand, within Atu3495 at 547.069 kb on + strand, within Atu3495 at 547.319 kb on + strand, within Atu3495 at 547.319 kb on + strand, within Atu3495 at 547.319 kb on + strand, within Atu3495 at 547.319 kb on + strand, within Atu3495 at 547.327 kb on - strand, within Atu3495 at 547.409 kb on - strand, within Atu3495 at 547.537 kb on + strand, within Atu3495 at 547.537 kb on + strand, within Atu3495 at 547.544 kb on - strand, within Atu3495 at 547.545 kb on - strand, within Atu3495 at 547.545 kb on - strand, within Atu3495 at 547.553 kb on - strand, within Atu3495 at 547.553 kb on - strand, within Atu3495 at 547.558 kb on + strand, within Atu3495 at 547.635 kb on + strand, within Atu3495 at 547.826 kb on - strand at 547.877 kb on - strand at 547.883 kb on - strand at 548.113 kb on - strand, within Atu3496 at 548.232 kb on - strand, within Atu3496 at 548.404 kb on - strand at 548.624 kb on - strand at 548.827 kb on - strand, within Atu3497
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 544,970 + +0.5 544,985 - -0.1 545,117 - -0.3 545,197 + Atu3494 0.12 -0.6 545,220 - Atu3494 0.16 -0.7 545,256 - Atu3494 0.21 -0.3 545,361 - Atu3494 0.36 +0.9 545,422 + Atu3494 0.45 -0.3 545,427 + Atu3494 0.45 +0.1 545,435 - Atu3494 0.46 -0.7 545,473 + Atu3494 0.52 -0.5 545,489 + Atu3494 0.54 -0.3 545,675 + Atu3494 0.81 -0.1 545,738 + +0.4 545,749 + -1.3 545,777 + -0.3 546,076 - -0.1 546,203 - Atu3495 0.12 -1.7 546,203 - Atu3495 0.12 -1.0 546,243 - Atu3495 0.14 -0.1 546,410 - Atu3495 0.23 -1.6 546,415 + Atu3495 0.23 -0.5 546,415 + Atu3495 0.23 -2.1 546,892 + Atu3495 0.48 -1.0 546,892 + Atu3495 0.48 -0.9 546,892 + Atu3495 0.48 -1.1 547,069 + Atu3495 0.57 -1.2 547,319 + Atu3495 0.70 -0.1 547,319 + Atu3495 0.70 -0.8 547,319 + Atu3495 0.70 -0.6 547,319 + Atu3495 0.70 -1.4 547,327 - Atu3495 0.70 -1.0 547,409 - Atu3495 0.74 -0.3 547,537 + Atu3495 0.81 -0.6 547,537 + Atu3495 0.81 -0.4 547,544 - Atu3495 0.81 -0.6 547,545 - Atu3495 0.81 -0.8 547,545 - Atu3495 0.81 -0.0 547,553 - Atu3495 0.82 -0.3 547,553 - Atu3495 0.82 -0.2 547,558 + Atu3495 0.82 -0.7 547,635 + Atu3495 0.86 +1.6 547,826 - +0.3 547,877 - -0.5 547,883 - -0.5 548,113 - Atu3496 0.39 -0.1 548,232 - Atu3496 0.63 -1.0 548,404 - -0.3 548,624 - -0.3 548,827 - Atu3497 0.65 +1.0
Or see this region's nucleotide sequence