Strain Fitness in Escherichia coli BW25113 around b3437
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
3,574,107 | + | gntU | b4476 | 0.27 | +1.0 |
3,574,108 | - | gntU | b4476 | 0.27 | -0.4 |
3,574,133 | - | gntU | b4476 | 0.29 | -0.6 |
3,574,154 | - | gntU | b4476 | 0.31 | -1.3 |
3,574,154 | - | gntU | b4476 | 0.31 | -0.2 |
3,574,187 | + | gntU | b4476 | 0.33 | -0.2 |
3,574,274 | + | gntU | b4476 | 0.40 | +0.2 |
3,574,282 | + | gntU | b4476 | 0.40 | -0.4 |
3,574,284 | + | gntU | b4476 | 0.40 | +0.2 |
3,574,326 | - | gntU | b4476 | 0.43 | +0.1 |
3,574,356 | + | gntU | b4476 | 0.46 | +0.6 |
3,574,376 | + | gntU | b4476 | 0.47 | -0.6 |
3,574,428 | + | gntU | b4476 | 0.51 | +0.3 |
3,574,428 | + | gntU | b4476 | 0.51 | +0.1 |
3,574,449 | - | gntU | b4476 | 0.53 | +0.0 |
3,574,466 | + | gntU | b4476 | 0.54 | +0.6 |
3,574,466 | + | gntU | b4476 | 0.54 | -1.2 |
3,574,487 | + | gntU | b4476 | 0.55 | +0.2 |
3,574,487 | + | gntU | b4476 | 0.55 | +0.2 |
3,574,490 | - | gntU | b4476 | 0.56 | -0.3 |
3,574,490 | - | gntU | b4476 | 0.56 | +0.1 |
3,574,502 | - | gntU | b4476 | 0.57 | -0.5 |
3,574,502 | - | gntU | b4476 | 0.57 | +0.3 |
3,574,528 | + | gntU | b4476 | 0.58 | -0.0 |
3,574,528 | + | gntU | b4476 | 0.58 | -0.1 |
3,574,547 | + | gntU | b4476 | 0.60 | -0.3 |
3,574,595 | + | gntU | b4476 | 0.63 | +0.0 |
3,574,598 | - | gntU | b4476 | 0.64 | +0.3 |
3,574,717 | + | gntU | b4476 | 0.73 | -0.2 |
3,574,717 | + | gntU | b4476 | 0.73 | +1.9 |
3,574,742 | - | gntU | b4476 | 0.74 | +0.3 |
3,574,750 | + | gntU | b4476 | 0.75 | +1.8 |
3,574,829 | - | gntU | b4476 | 0.81 | -0.3 |
3,574,894 | - | gntU | b4476 | 0.86 | -0.2 |
3,574,965 | - | +0.2 | |||
3,574,972 | + | -1.5 | |||
3,574,972 | + | -0.5 | |||
3,574,980 | - | +0.1 | |||
3,575,042 | + | +0.4 | |||
3,575,045 | - | +0.6 | |||
3,575,083 | - | +0.8 | |||
3,575,159 | + | gntK | b3437 | 0.13 | -1.2 |
3,575,162 | + | gntK | b3437 | 0.14 | -0.5 |
3,575,162 | + | gntK | b3437 | 0.14 | -0.4 |
3,575,174 | + | gntK | b3437 | 0.16 | -2.1 |
3,575,197 | + | gntK | b3437 | 0.21 | -0.5 |
3,575,314 | + | gntK | b3437 | 0.43 | +0.1 |
3,575,380 | - | gntK | b3437 | 0.55 | -0.1 |
3,575,510 | - | gntK | b3437 | 0.80 | +0.0 |
3,575,510 | - | gntK | b3437 | 0.80 | +0.2 |
3,575,514 | + | gntK | b3437 | 0.81 | -0.6 |
3,575,528 | - | gntK | b3437 | 0.83 | -0.7 |
3,575,560 | + | gntK | b3437 | 0.89 | -0.5 |
3,575,595 | + | -1.1 | |||
3,575,595 | + | -0.4 | |||
3,575,608 | - | +1.6 | |||
3,575,629 | - | -0.6 | |||
3,575,629 | - | +0.9 | |||
3,575,666 | + | -1.4 | |||
3,575,666 | + | +2.0 | |||
3,575,709 | - | +0.2 | |||
3,575,720 | + | -0.3 | |||
3,575,722 | + | -0.5 | |||
3,575,722 | + | -0.5 | |||
3,575,728 | + | -1.0 | |||
3,575,735 | - | -0.2 | |||
3,575,814 | - | -0.5 | |||
3,575,869 | + | gntR | b3438 | 0.12 | +0.3 |
3,575,869 | + | gntR | b3438 | 0.12 | +1.0 |
3,575,873 | + | gntR | b3438 | 0.12 | -1.8 |
3,575,905 | - | gntR | b3438 | 0.15 | -0.6 |
3,575,905 | - | gntR | b3438 | 0.15 | -1.0 |
3,575,923 | - | gntR | b3438 | 0.17 | +0.3 |
3,576,111 | + | gntR | b3438 | 0.36 | +0.1 |
3,576,117 | + | gntR | b3438 | 0.36 | -0.0 |
3,576,117 | + | gntR | b3438 | 0.36 | -1.5 |
3,576,117 | - | gntR | b3438 | 0.36 | -0.6 |
3,576,137 | - | gntR | b3438 | 0.38 | +1.8 |
3,576,137 | - | gntR | b3438 | 0.38 | -0.9 |
3,576,199 | + | gntR | b3438 | 0.45 | -0.1 |
3,576,235 | + | gntR | b3438 | 0.48 | -0.3 |
3,576,450 | + | gntR | b3438 | 0.70 | -0.2 |
3,576,538 | + | gntR | b3438 | 0.79 | +2.0 |
3,576,538 | + | gntR | b3438 | 0.79 | +1.0 |
3,576,594 | + | gntR | b3438 | 0.84 | -0.6 |
3,576,594 | + | gntR | b3438 | 0.84 | -0.8 |
3,576,594 | + | gntR | b3438 | 0.84 | +1.7 |
Or see this region's nucleotide sequence