Strain Fitness in Escherichia coli BW25113 around b2448
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,560,616 | - | yffP | b2447 | 0.12 | -0.1 |
2,560,683 | + | yffP | b2447 | 0.23 | -1.0 |
2,560,683 | + | yffP | b2447 | 0.23 | +0.6 |
2,560,876 | - | yffP | b2447 | 0.56 | +0.3 |
2,560,889 | - | yffP | b2447 | 0.58 | +0.0 |
2,561,041 | - | yffP | b2447 | 0.83 | +0.5 |
2,561,297 | - | -0.5 | |||
2,561,297 | - | -0.8 | |||
2,561,561 | + | +0.7 | |||
2,561,561 | + | -1.9 | |||
2,561,607 | - | -0.6 | |||
2,561,652 | - | yffQ | b2448 | 0.10 | -2.2 |
2,561,668 | - | yffQ | b2448 | 0.14 | -0.5 |
2,561,668 | - | yffQ | b2448 | 0.14 | -0.1 |
2,561,805 | + | yffQ | b2448 | 0.51 | -0.2 |
2,561,872 | - | yffQ | b2448 | 0.68 | -0.5 |
2,561,872 | - | yffQ | b2448 | 0.68 | -0.8 |
2,561,872 | - | yffQ | b2448 | 0.68 | +0.9 |
2,561,964 | + | +0.2 | |||
2,561,964 | + | +0.5 | |||
2,562,073 | + | yffR | b2449 | 0.18 | +0.2 |
2,562,073 | + | yffR | b2449 | 0.18 | -0.1 |
2,562,092 | + | yffR | b2449 | 0.23 | +0.5 |
2,562,092 | + | yffR | b2449 | 0.23 | +0.2 |
2,562,114 | + | yffR | b2449 | 0.28 | +0.2 |
2,562,122 | - | yffR | b2449 | 0.31 | +0.2 |
2,562,140 | - | yffR | b2449 | 0.35 | -0.4 |
2,562,169 | - | yffR | b2449 | 0.42 | -0.3 |
2,562,407 | - | -0.4 | |||
2,562,416 | + | -0.8 | |||
2,562,607 | - | -1.8 | |||
2,562,611 | + | -0.5 | |||
2,562,611 | + | -0.2 | |||
2,562,693 | - | yffS | b2450 | 0.18 | +0.3 |
2,562,777 | + | yffS | b2450 | 0.29 | +0.8 |
2,562,777 | + | yffS | b2450 | 0.29 | +0.1 |
Or see this region's nucleotide sequence