Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydaV and ydaW overlap by 29 nucleotides ydaW and rzpR are separated by 0 nucleotides rzpR and rzoR overlap by 245 nucleotides rzoR and trkG are separated by 196 nucleotides
b1360: ydaV - Rac prophage; predicted DNA replication protein (NCBI), at 1,420,007 to 1,420,753
ydaV
b1361: ydaW - orf, hypothetical protein (VIMSS), at 1,420,725 to 1,421,224
ydaW
b1362: rzpR - putative Rac prophage endopeptidase (VIMSS), at 1,421,225 to 1,421,668
rzpR
b4528: rzoR - Rac prophage; predicted lipoprotein (NCBI), at 1,421,424 to 1,421,609
rzoR
b1363: trkG - Rac prophage; potassium transporter subunit (NCBI), at 1,421,806 to 1,423,263
trkG
Position (kb)
1421
1422 Strain fitness (log2 ratio)
-1
0
1 at 1420.436 kb on - strand, within ydaV at 1420.589 kb on + strand, within ydaV at 1420.831 kb on - strand, within ydaW at 1421.276 kb on - strand, within rzpR at 1421.536 kb on + strand at 1421.536 kb on + strand at 1421.602 kb on + strand at 1421.612 kb on + strand, within rzpR at 1421.612 kb on + strand, within rzpR at 1421.623 kb on + strand, within rzpR at 1421.623 kb on + strand, within rzpR at 1421.638 kb on + strand at 1421.638 kb on + strand at 1421.641 kb on + strand at 1421.672 kb on + strand at 1421.672 kb on + strand at 1421.813 kb on + strand at 1421.838 kb on + strand at 1421.838 kb on + strand at 1421.841 kb on + strand at 1421.841 kb on + strand at 1421.846 kb on + strand at 1421.847 kb on + strand at 1421.848 kb on + strand at 1421.848 kb on + strand at 1421.859 kb on + strand at 1421.875 kb on + strand at 1421.891 kb on + strand at 1421.895 kb on + strand at 1421.983 kb on + strand, within trkG at 1422.251 kb on + strand, within trkG at 1422.251 kb on + strand, within trkG at 1422.308 kb on - strand, within trkG at 1422.353 kb on + strand, within trkG at 1422.475 kb on + strand, within trkG
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,420,436 - ydaV b1360 0.57 +0.4 1,420,589 + ydaV b1360 0.78 -0.1 1,420,831 - ydaW b1361 0.21 -0.9 1,421,276 - rzpR b1362 0.11 -0.4 1,421,536 + +0.9 1,421,536 + -0.3 1,421,602 + +1.3 1,421,612 + rzpR b1362 0.87 +0.1 1,421,612 + rzpR b1362 0.87 -0.1 1,421,623 + rzpR b1362 0.90 -0.5 1,421,623 + rzpR b1362 0.90 -0.9 1,421,638 + +0.5 1,421,638 + -0.0 1,421,641 + -0.0 1,421,672 + +0.7 1,421,672 + +0.7 1,421,813 + -0.3 1,421,838 + +0.7 1,421,838 + +0.3 1,421,841 + +0.3 1,421,841 + +0.1 1,421,846 + +1.7 1,421,847 + +1.0 1,421,848 + -0.6 1,421,848 + -0.1 1,421,859 + +0.7 1,421,875 + -0.6 1,421,891 + -0.3 1,421,895 + +0.2 1,421,983 + trkG b1363 0.12 +0.7 1,422,251 + trkG b1363 0.31 +0.7 1,422,251 + trkG b1363 0.31 +0.7 1,422,308 - trkG b1363 0.34 +0.7 1,422,353 + trkG b1363 0.38 +0.7 1,422,475 + trkG b1363 0.46 +0.7
Or see this region's nucleotide sequence