Strain Fitness in Agrobacterium fabrum C58 around Atu5530

Experiment: Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5529 and Atu5530 are separated by 12 nucleotidesAtu5530 and Atu5531 are separated by 247 nucleotides Atu5529: Atu5529 - two component sensor kinase, at 522,963 to 524,114 Atu5529 Atu5530: Atu5530 - two component response regulator, at 524,127 to 524,735 Atu5530 Atu5531: Atu5531 - ABC transporter substrate binding protein, at 524,983 to 526,233 Atu5531 Position (kb) 524 525Strain fitness (log2 ratio) -2 -1 0 1 2at 523.184 kb on + strand, within Atu5529at 523.192 kb on - strand, within Atu5529at 523.273 kb on - strand, within Atu5529at 523.398 kb on + strand, within Atu5529at 523.409 kb on + strand, within Atu5529at 523.422 kb on - strand, within Atu5529at 523.531 kb on - strand, within Atu5529at 523.543 kb on - strand, within Atu5529at 523.543 kb on - strand, within Atu5529at 523.543 kb on - strand, within Atu5529at 523.543 kb on - strand, within Atu5529at 523.543 kb on - strand, within Atu5529at 523.545 kb on + strand, within Atu5529at 523.605 kb on + strand, within Atu5529at 523.613 kb on - strand, within Atu5529at 523.655 kb on + strand, within Atu5529at 523.687 kb on + strand, within Atu5529at 523.695 kb on - strand, within Atu5529at 523.712 kb on - strand, within Atu5529at 523.744 kb on - strand, within Atu5529at 523.754 kb on - strand, within Atu5529at 523.763 kb on + strand, within Atu5529at 523.828 kb on + strand, within Atu5529at 523.854 kb on + strand, within Atu5529at 523.873 kb on + strand, within Atu5529at 523.911 kb on + strand, within Atu5529at 523.936 kb on - strand, within Atu5529at 523.998 kb on - strand, within Atu5529at 523.998 kb on - strand, within Atu5529at 524.098 kb on + strandat 524.103 kb on + strandat 524.116 kb on - strandat 524.116 kb on - strandat 524.129 kb on - strandat 524.141 kb on + strandat 524.165 kb on + strandat 524.188 kb on - strand, within Atu5530at 524.254 kb on - strand, within Atu5530at 524.254 kb on - strand, within Atu5530at 524.254 kb on - strand, within Atu5530at 524.254 kb on - strand, within Atu5530at 524.276 kb on + strand, within Atu5530at 524.278 kb on + strand, within Atu5530at 524.348 kb on + strand, within Atu5530at 524.348 kb on + strand, within Atu5530at 524.348 kb on + strand, within Atu5530at 524.393 kb on + strand, within Atu5530at 524.400 kb on + strand, within Atu5530at 524.401 kb on - strand, within Atu5530at 524.401 kb on - strand, within Atu5530at 524.412 kb on + strand, within Atu5530at 524.412 kb on + strand, within Atu5530at 524.412 kb on + strand, within Atu5530at 524.412 kb on + strand, within Atu5530at 524.440 kb on - strand, within Atu5530at 524.551 kb on - strand, within Atu5530at 524.634 kb on - strand, within Atu5530at 524.665 kb on - strand, within Atu5530at 524.853 kb on + strandat 524.886 kb on + strandat 524.930 kb on + strandat 524.930 kb on + strandat 524.930 kb on + strandat 524.930 kb on + strandat 524.938 kb on - strandat 524.938 kb on - strandat 524.945 kb on + strandat 524.970 kb on - strandat 524.988 kb on + strandat 524.994 kb on - strandat 525.136 kb on + strand, within Atu5531at 525.144 kb on - strand, within Atu5531at 525.212 kb on - strand, within Atu5531at 525.231 kb on - strand, within Atu5531at 525.246 kb on - strand, within Atu5531at 525.305 kb on + strand, within Atu5531at 525.341 kb on + strand, within Atu5531at 525.351 kb on + strand, within Atu5531at 525.356 kb on + strand, within Atu5531at 525.356 kb on + strand, within Atu5531at 525.361 kb on + strand, within Atu5531at 525.364 kb on - strand, within Atu5531at 525.366 kb on + strand, within Atu5531at 525.396 kb on - strand, within Atu5531at 525.436 kb on - strand, within Atu5531at 525.560 kb on - strand, within Atu5531

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
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523,184 + Atu5529 0.19 +0.6
523,192 - Atu5529 0.20 -0.3
523,273 - Atu5529 0.27 -0.1
523,398 + Atu5529 0.38 +1.0
523,409 + Atu5529 0.39 -1.1
523,422 - Atu5529 0.40 +2.0
523,531 - Atu5529 0.49 -0.2
523,543 - Atu5529 0.50 +1.1
523,543 - Atu5529 0.50 +0.3
523,543 - Atu5529 0.50 +1.8
523,543 - Atu5529 0.50 -1.9
523,543 - Atu5529 0.50 -0.7
523,545 + Atu5529 0.51 +0.8
523,605 + Atu5529 0.56 +0.3
523,613 - Atu5529 0.56 -1.8
523,655 + Atu5529 0.60 +0.8
523,687 + Atu5529 0.63 -0.3
523,695 - Atu5529 0.64 -0.0
523,712 - Atu5529 0.65 +0.4
523,744 - Atu5529 0.68 +0.2
523,754 - Atu5529 0.69 +0.5
523,763 + Atu5529 0.69 -0.5
523,828 + Atu5529 0.75 -0.3
523,854 + Atu5529 0.77 -1.2
523,873 + Atu5529 0.79 +0.6
523,911 + Atu5529 0.82 +0.6
523,936 - Atu5529 0.84 -1.0
523,998 - Atu5529 0.90 +1.4
523,998 - Atu5529 0.90 +1.6
524,098 + -1.3
524,103 + +0.0
524,116 - +0.3
524,116 - -0.4
524,129 - -0.8
524,141 + -0.1
524,165 + +0.3
524,188 - Atu5530 0.10 -0.1
524,254 - Atu5530 0.21 -1.2
524,254 - Atu5530 0.21 -0.8
524,254 - Atu5530 0.21 +0.6
524,254 - Atu5530 0.21 +1.0
524,276 + Atu5530 0.24 +0.2
524,278 + Atu5530 0.25 -0.2
524,348 + Atu5530 0.36 -1.1
524,348 + Atu5530 0.36 -0.6
524,348 + Atu5530 0.36 +0.1
524,393 + Atu5530 0.44 +0.9
524,400 + Atu5530 0.45 +0.1
524,401 - Atu5530 0.45 -0.3
524,401 - Atu5530 0.45 +0.1
524,412 + Atu5530 0.47 +0.8
524,412 + Atu5530 0.47 +0.2
524,412 + Atu5530 0.47 +1.0
524,412 + Atu5530 0.47 -0.9
524,440 - Atu5530 0.51 -0.3
524,551 - Atu5530 0.70 +0.6
524,634 - Atu5530 0.83 +0.1
524,665 - Atu5530 0.88 +1.2
524,853 + +0.6
524,886 + +0.7
524,930 + -0.6
524,930 + -0.3
524,930 + +0.0
524,930 + -0.2
524,938 - +0.4
524,938 - +0.1
524,945 + -0.8
524,970 - -0.2
524,988 + -0.3
524,994 - +0.1
525,136 + Atu5531 0.12 -1.0
525,144 - Atu5531 0.13 +0.8
525,212 - Atu5531 0.18 -2.3
525,231 - Atu5531 0.20 +1.1
525,246 - Atu5531 0.21 -0.3
525,305 + Atu5531 0.26 +0.1
525,341 + Atu5531 0.29 +0.2
525,351 + Atu5531 0.29 -0.2
525,356 + Atu5531 0.30 +0.4
525,356 + Atu5531 0.30 -0.9
525,361 + Atu5531 0.30 +0.1
525,364 - Atu5531 0.30 +1.0
525,366 + Atu5531 0.31 -0.1
525,396 - Atu5531 0.33 -0.3
525,436 - Atu5531 0.36 +0.6
525,560 - Atu5531 0.46 -0.2

Or see this region's nucleotide sequence