Experiment: Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5528 and Atu5529 are separated by 431 nucleotides Atu5529 and Atu5530 are separated by 12 nucleotides Atu5530 and Atu5531 are separated by 247 nucleotides
Atu5528: Atu5528 - two component sensor kinase, at 520,603 to 522,531
Atu5528
Atu5529: Atu5529 - two component sensor kinase, at 522,963 to 524,114
Atu5529
Atu5530: Atu5530 - two component response regulator, at 524,127 to 524,735
Atu5530
Atu5531: Atu5531 - ABC transporter substrate binding protein, at 524,983 to 526,233
Atu5531
Position (kb) 522
523
524
525 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 521.966 kb on + strand, within Atu5528 at 521.966 kb on + strand, within Atu5528 at 521.976 kb on - strand, within Atu5528 at 521.976 kb on - strand, within Atu5528 at 521.986 kb on - strand, within Atu5528 at 522.000 kb on - strand, within Atu5528 at 522.035 kb on + strand, within Atu5528 at 522.041 kb on + strand, within Atu5528 at 522.131 kb on - strand, within Atu5528 at 522.312 kb on + strand, within Atu5528 at 522.346 kb on + strand at 522.393 kb on + strand at 522.398 kb on + strand at 522.445 kb on - strand at 522.445 kb on - strand at 522.474 kb on - strand at 522.514 kb on + strand at 522.514 kb on + strand at 522.529 kb on - strand at 522.539 kb on - strand at 522.540 kb on - strand at 522.547 kb on - strand at 522.567 kb on + strand at 522.590 kb on + strand at 522.645 kb on + strand at 522.647 kb on + strand at 522.673 kb on - strand at 522.689 kb on + strand at 522.712 kb on + strand at 522.712 kb on + strand at 522.712 kb on + strand at 522.720 kb on - strand at 522.772 kb on + strand at 522.780 kb on - strand at 522.788 kb on - strand at 522.790 kb on + strand at 522.800 kb on + strand at 522.846 kb on - strand at 522.864 kb on + strand at 522.902 kb on + strand at 522.912 kb on + strand at 522.912 kb on + strand at 522.920 kb on - strand at 522.920 kb on - strand at 523.016 kb on + strand at 523.024 kb on - strand at 523.079 kb on + strand, within Atu5529 at 523.089 kb on + strand, within Atu5529 at 523.089 kb on + strand, within Atu5529 at 523.184 kb on + strand, within Atu5529 at 523.192 kb on - strand, within Atu5529 at 523.273 kb on - strand, within Atu5529 at 523.398 kb on + strand, within Atu5529 at 523.409 kb on + strand, within Atu5529 at 523.422 kb on - strand, within Atu5529 at 523.531 kb on - strand, within Atu5529 at 523.543 kb on - strand, within Atu5529 at 523.543 kb on - strand, within Atu5529 at 523.543 kb on - strand, within Atu5529 at 523.543 kb on - strand, within Atu5529 at 523.543 kb on - strand, within Atu5529 at 523.545 kb on + strand, within Atu5529 at 523.605 kb on + strand, within Atu5529 at 523.613 kb on - strand, within Atu5529 at 523.655 kb on + strand, within Atu5529 at 523.687 kb on + strand, within Atu5529 at 523.695 kb on - strand, within Atu5529 at 523.712 kb on - strand, within Atu5529 at 523.744 kb on - strand, within Atu5529 at 523.754 kb on - strand, within Atu5529 at 523.763 kb on + strand, within Atu5529 at 523.828 kb on + strand, within Atu5529 at 523.854 kb on + strand, within Atu5529 at 523.873 kb on + strand, within Atu5529 at 523.911 kb on + strand, within Atu5529 at 523.936 kb on - strand, within Atu5529 at 523.998 kb on - strand, within Atu5529 at 523.998 kb on - strand, within Atu5529 at 524.098 kb on + strand at 524.103 kb on + strand at 524.116 kb on - strand at 524.116 kb on - strand at 524.129 kb on - strand at 524.141 kb on + strand at 524.165 kb on + strand at 524.188 kb on - strand, within Atu5530 at 524.254 kb on - strand, within Atu5530 at 524.254 kb on - strand, within Atu5530 at 524.254 kb on - strand, within Atu5530 at 524.254 kb on - strand, within Atu5530 at 524.276 kb on + strand, within Atu5530 at 524.278 kb on + strand, within Atu5530 at 524.348 kb on + strand, within Atu5530 at 524.348 kb on + strand, within Atu5530 at 524.348 kb on + strand, within Atu5530 at 524.393 kb on + strand, within Atu5530 at 524.400 kb on + strand, within Atu5530 at 524.401 kb on - strand, within Atu5530 at 524.401 kb on - strand, within Atu5530 at 524.412 kb on + strand, within Atu5530 at 524.412 kb on + strand, within Atu5530 at 524.412 kb on + strand, within Atu5530 at 524.412 kb on + strand, within Atu5530 at 524.440 kb on - strand, within Atu5530 at 524.551 kb on - strand, within Atu5530 at 524.634 kb on - strand, within Atu5530 at 524.665 kb on - strand, within Atu5530 at 524.853 kb on + strand at 524.886 kb on + strand at 524.930 kb on + strand at 524.930 kb on + strand at 524.930 kb on + strand at 524.930 kb on + strand at 524.938 kb on - strand at 524.938 kb on - strand at 524.945 kb on + strand at 524.970 kb on - strand at 524.988 kb on + strand at 524.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 521,966 + Atu5528 0.71 +0.5 521,966 + Atu5528 0.71 +1.0 521,976 - Atu5528 0.71 -0.1 521,976 - Atu5528 0.71 -0.1 521,986 - Atu5528 0.72 +2.8 522,000 - Atu5528 0.72 -0.1 522,035 + Atu5528 0.74 -0.1 522,041 + Atu5528 0.75 -0.4 522,131 - Atu5528 0.79 -1.2 522,312 + Atu5528 0.89 -0.1 522,346 + -0.4 522,393 + +0.7 522,398 + +0.6 522,445 - -0.1 522,445 - +1.7 522,474 - -0.2 522,514 + +0.2 522,514 + -0.4 522,529 - -0.4 522,539 - -1.7 522,540 - -0.3 522,547 - -0.5 522,567 + +0.1 522,590 + -0.0 522,645 + +0.2 522,647 + +0.2 522,673 - -0.4 522,689 + -1.1 522,712 + -1.0 522,712 + +0.3 522,712 + -0.6 522,720 - -0.8 522,772 + -0.8 522,780 - -0.1 522,788 - +0.1 522,790 + -0.5 522,800 + +0.5 522,846 - -0.0 522,864 + -0.1 522,902 + -1.9 522,912 + +3.4 522,912 + -0.2 522,920 - +1.2 522,920 - +0.1 523,016 + +1.3 523,024 - +0.5 523,079 + Atu5529 0.10 +0.6 523,089 + Atu5529 0.11 -0.4 523,089 + Atu5529 0.11 -0.1 523,184 + Atu5529 0.19 +0.6 523,192 - Atu5529 0.20 -0.3 523,273 - Atu5529 0.27 -0.1 523,398 + Atu5529 0.38 +1.0 523,409 + Atu5529 0.39 -1.1 523,422 - Atu5529 0.40 +2.0 523,531 - Atu5529 0.49 -0.2 523,543 - Atu5529 0.50 +1.1 523,543 - Atu5529 0.50 +0.3 523,543 - Atu5529 0.50 +1.8 523,543 - Atu5529 0.50 -1.9 523,543 - Atu5529 0.50 -0.7 523,545 + Atu5529 0.51 +0.8 523,605 + Atu5529 0.56 +0.3 523,613 - Atu5529 0.56 -1.8 523,655 + Atu5529 0.60 +0.8 523,687 + Atu5529 0.63 -0.3 523,695 - Atu5529 0.64 -0.0 523,712 - Atu5529 0.65 +0.4 523,744 - Atu5529 0.68 +0.2 523,754 - Atu5529 0.69 +0.5 523,763 + Atu5529 0.69 -0.5 523,828 + Atu5529 0.75 -0.3 523,854 + Atu5529 0.77 -1.2 523,873 + Atu5529 0.79 +0.6 523,911 + Atu5529 0.82 +0.6 523,936 - Atu5529 0.84 -1.0 523,998 - Atu5529 0.90 +1.4 523,998 - Atu5529 0.90 +1.6 524,098 + -1.3 524,103 + +0.0 524,116 - +0.3 524,116 - -0.4 524,129 - -0.8 524,141 + -0.1 524,165 + +0.3 524,188 - Atu5530 0.10 -0.1 524,254 - Atu5530 0.21 -1.2 524,254 - Atu5530 0.21 -0.8 524,254 - Atu5530 0.21 +0.6 524,254 - Atu5530 0.21 +1.0 524,276 + Atu5530 0.24 +0.2 524,278 + Atu5530 0.25 -0.2 524,348 + Atu5530 0.36 -1.1 524,348 + Atu5530 0.36 -0.6 524,348 + Atu5530 0.36 +0.1 524,393 + Atu5530 0.44 +0.9 524,400 + Atu5530 0.45 +0.1 524,401 - Atu5530 0.45 -0.3 524,401 - Atu5530 0.45 +0.1 524,412 + Atu5530 0.47 +0.8 524,412 + Atu5530 0.47 +0.2 524,412 + Atu5530 0.47 +1.0 524,412 + Atu5530 0.47 -0.9 524,440 - Atu5530 0.51 -0.3 524,551 - Atu5530 0.70 +0.6 524,634 - Atu5530 0.83 +0.1 524,665 - Atu5530 0.88 +1.2 524,853 + +0.6 524,886 + +0.7 524,930 + -0.6 524,930 + -0.3 524,930 + +0.0 524,930 + -0.2 524,938 - +0.4 524,938 - +0.1 524,945 + -0.8 524,970 - -0.2 524,988 + -0.3 524,994 - +0.1
Or see this region's nucleotide sequence