Experiment: Nalidixic 0.0313 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt creD and arcA are separated by 59 nucleotides arcA and yjjY are separated by 95 nucleotides yjjY and yjtD are separated by 399 nucleotides
b4400: creD - inner membrane protein (NCBI), at 4,636,201 to 4,637,553
creD
b4401: arcA - DNA-binding response regulator in two-component regulatory system with ArcB or CpxA (NCBI), at 4,637,613 to 4,638,329
arcA
b4402: yjjY - hypothetical protein (NCBI), at 4,638,425 to 4,638,565
yjjY
b4403: yjtD - predicted rRNA methyltransferase (NCBI), at 4,638,965 to 4,639,651
yjtD
Position (kb)
4638
4639 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4637.462 kb on + strand at 4637.463 kb on + strand at 4638.330 kb on - strand at 4638.434 kb on + strand at 4638.491 kb on + strand, within yjjY at 4638.491 kb on + strand, within yjjY at 4638.568 kb on + strand at 4638.577 kb on - strand at 4638.579 kb on + strand at 4638.928 kb on + strand at 4639.075 kb on + strand, within yjtD at 4639.075 kb on + strand, within yjtD at 4639.207 kb on - strand, within yjtD at 4639.207 kb on - strand, within yjtD at 4639.230 kb on - strand, within yjtD at 4639.274 kb on + strand, within yjtD at 4639.321 kb on + strand, within yjtD at 4639.321 kb on + strand, within yjtD at 4639.329 kb on - strand, within yjtD at 4639.385 kb on - strand, within yjtD at 4639.385 kb on - strand, within yjtD at 4639.476 kb on + strand, within yjtD at 4639.523 kb on + strand, within yjtD at 4639.560 kb on + strand, within yjtD
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.0313 mM remove 4,637,462 + -0.4 4,637,463 + -1.8 4,638,330 - +0.0 4,638,434 + -2.0 4,638,491 + yjjY b4402 0.47 -0.3 4,638,491 + yjjY b4402 0.47 -0.9 4,638,568 + -0.6 4,638,577 - -0.3 4,638,579 + +2.5 4,638,928 + -0.5 4,639,075 + yjtD b4403 0.16 +0.6 4,639,075 + yjtD b4403 0.16 -0.0 4,639,207 - yjtD b4403 0.35 +0.1 4,639,207 - yjtD b4403 0.35 -0.3 4,639,230 - yjtD b4403 0.39 -0.3 4,639,274 + yjtD b4403 0.45 -0.3 4,639,321 + yjtD b4403 0.52 +0.7 4,639,321 + yjtD b4403 0.52 -0.3 4,639,329 - yjtD b4403 0.53 -0.7 4,639,385 - yjtD b4403 0.61 -1.5 4,639,385 - yjtD b4403 0.61 -1.0 4,639,476 + yjtD b4403 0.74 -0.1 4,639,523 + yjtD b4403 0.81 -0.1 4,639,560 + yjtD b4403 0.87 +0.1
Or see this region's nucleotide sequence