Strain Fitness in Escherichia coli BW25113 around b4062

Experiment: Nalidixic 0.0313 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nalidixic 0.0313 mM
4,274,110	-	yjcC	b4061	0.39	+1.0
4,274,110	-	yjcC	b4061	0.39	+1.0
4,274,180	-	yjcC	b4061	0.43	+1.0
4,274,180	-	yjcC	b4061	0.43	+1.0
4,274,185	+	yjcC	b4061	0.44	-0.6
4,274,188	+	yjcC	b4061	0.44	+3.5
4,274,192	+	yjcC	b4061	0.44	-0.4
4,274,224	+	yjcC	b4061	0.46	-0.0
4,274,228	+	yjcC	b4061	0.46	+1.0
4,274,259	+	yjcC	b4061	0.48	-0.0
4,274,259	+	yjcC	b4061	0.48	+1.5
4,274,262	-	yjcC	b4061	0.48	+1.0
4,274,262	-	yjcC	b4061	0.48	+1.0
4,274,271	+	yjcC	b4061	0.49	-0.6
4,274,395	+	yjcC	b4061	0.57	+1.0
4,274,395	+	yjcC	b4061	0.57	+1.0
4,274,395	+	yjcC	b4061	0.57	-0.0
4,274,403	+	yjcC	b4061	0.57	+1.0
4,274,403	-	yjcC	b4061	0.57	-0.0
4,274,403	-	yjcC	b4061	0.57	+1.7
4,274,405	+	yjcC	b4061	0.57	-1.4
4,274,406	+	yjcC	b4061	0.57	+2.0
4,274,406	+	yjcC	b4061	0.57	-0.0
4,274,411	+	yjcC	b4061	0.58	+1.0
4,274,411	-	yjcC	b4061	0.58	+1.5
4,274,414	-	yjcC	b4061	0.58	-0.0
4,274,414	-	yjcC	b4061	0.58	-1.2
4,274,414	-	yjcC	b4061	0.58	-0.9
4,274,421	+	yjcC	b4061	0.58	-0.0
4,274,427	-	yjcC	b4061	0.59	-0.9
4,274,432	-	yjcC	b4061	0.59	-1.6
4,274,433	-	yjcC	b4061	0.59	-1.9
4,274,465	+	yjcC	b4061	0.61	-0.0
4,274,477	+	yjcC	b4061	0.62	+0.8
4,274,477	+	yjcC	b4061	0.62	-0.0
4,274,482	+	yjcC	b4061	0.62	+1.0
4,274,482	+	yjcC	b4061	0.62	-1.5
4,274,482	+	yjcC	b4061	0.62	-0.8
4,274,482	-	yjcC	b4061	0.62	+0.3
4,274,497	-	yjcC	b4061	0.63	-0.6
4,274,525	-	yjcC	b4061	0.65	-0.6
4,274,542	+	yjcC	b4061	0.66	+0.4
4,274,542	+	yjcC	b4061	0.66	-0.5
4,274,545	-	yjcC	b4061	0.66	-1.6
4,274,545	-	yjcC	b4061	0.66	-0.0
4,274,547	-	yjcC	b4061	0.66	-0.4
4,274,550	+	yjcC	b4061	0.67	-1.5
4,274,592	+	yjcC	b4061	0.69	-0.6
4,274,592	+	yjcC	b4061	0.69	+0.7
4,274,602	-	yjcC	b4061	0.70	+1.0
4,274,607	-	yjcC	b4061	0.70	-0.6
4,274,607	-	yjcC	b4061	0.70	+0.5
4,274,607	-	yjcC	b4061	0.70	+0.4
4,274,607	-	yjcC	b4061	0.70	-1.2
4,274,611	-	yjcC	b4061	0.70	-0.9
4,274,616	-	yjcC	b4061	0.71	-0.6
4,274,618	+	yjcC	b4061	0.71	+0.1
4,274,629	+	yjcC	b4061	0.72	+1.0
4,274,629	+	yjcC	b4061	0.72	-0.7
4,274,629	-	yjcC	b4061	0.72	+1.5
4,274,630	-	yjcC	b4061	0.72	+0.4
4,274,630	-	yjcC	b4061	0.72	-0.0
4,274,640	+	yjcC	b4061	0.72	-0.0
4,274,646	+	yjcC	b4061	0.73	+1.4
4,274,646	+	yjcC	b4061	0.73	+1.3
4,274,677	-	yjcC	b4061	0.75	+0.6
4,274,721	-	yjcC	b4061	0.77	-0.3
4,274,725	+	yjcC	b4061	0.78	-1.0
4,274,725	+	yjcC	b4061	0.78	-1.0
4,274,729	+	yjcC	b4061	0.78	-1.0
4,274,739	+	yjcC	b4061	0.78	-0.1
4,274,747	-	yjcC	b4061	0.79	+0.2
4,274,747	-	yjcC	b4061	0.79	-0.8
4,274,762	+	yjcC	b4061	0.80	-0.0
4,274,776	+	yjcC	b4061	0.81	+0.2
4,274,776	+	yjcC	b4061	0.81	+0.0
4,274,776	+	yjcC	b4061	0.81	+0.3
4,274,777	+	yjcC	b4061	0.81	+0.5
4,274,777	+	yjcC	b4061	0.81	-0.7
4,274,784	-	yjcC	b4061	0.81	-1.5
4,274,784	-	yjcC	b4061	0.81	+1.4
4,274,784	-	yjcC	b4061	0.81	-0.2
4,274,784	-	yjcC	b4061	0.81	+0.3
4,274,784	-	yjcC	b4061	0.81	+0.1
4,274,785	-	yjcC	b4061	0.81	+2.3
4,274,785	-	yjcC	b4061	0.81	-1.0
4,274,785	-	yjcC	b4061	0.81	+0.5
4,274,855	+	yjcC	b4061	0.86	+1.0
4,274,863	-	yjcC	b4061	0.86	+0.5
4,274,882	+	yjcC	b4061	0.87	-0.9
4,274,895	+	yjcC	b4061	0.88	-0.3
4,274,895	+	yjcC	b4061	0.88	+0.5
4,274,895	-	yjcC	b4061	0.88	-0.4
4,274,895	-	yjcC	b4061	0.88	-0.5
4,274,897	+	yjcC	b4061	0.88	+0.2
4,274,901	-	yjcC	b4061	0.89	-0.5
4,274,901	-	yjcC	b4061	0.89	-0.4
4,274,911	+	yjcC	b4061	0.89	+0.4
4,274,923	-				-0.4
4,274,949	+				-0.3
4,274,951	+				+0.3
4,274,951	+				-0.6
4,274,959	-				-0.2
4,274,981	+				+0.2
4,274,999	-				+0.2
4,274,999	-				-0.5
4,275,040	-				+0.1
4,275,144	-	soxS	b4062	0.19	-0.1
4,275,169	+	soxS	b4062	0.27	-0.4
4,275,229	-	soxS	b4062	0.45	-0.8
4,275,346	-	soxS	b4062	0.81	-1.4
4,275,362	-	soxS	b4062	0.86	-0.5
4,275,589	+	soxR	b4063	0.21	-0.0
4,275,718	+	soxR	b4063	0.49	-1.0
4,275,739	+	soxR	b4063	0.53	-0.5
4,275,751	-	soxR	b4063	0.56	-0.3
4,275,751	-	soxR	b4063	0.56	+0.5
4,275,784	+	soxR	b4063	0.63	-0.2
4,275,816	-	soxR	b4063	0.70	+1.6
4,275,816	-	soxR	b4063	0.70	+0.5
4,275,852	+				+1.0
4,276,130	+				-0.3
4,276,194	+				-0.8
4,276,194	+				-0.1
4,276,194	+				-0.2
4,276,202	-				+0.2
4,276,202	-				-0.7
4,276,202	-				-0.2