Strain Fitness in Escherichia coli BW25113 around b4480

Experiment: Trimethoprim 0.0025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trimethoprim 0.0025 mM
3,944,961	+	aspT	b3760	0.86	+1.2
3,944,971	+				-0.3
3,945,046	+	trpT	b3761	0.87	+0.2
3,945,298	+	hdfR	b4480	0.17	+1.4
3,945,298	+	hdfR	b4480	0.17	+1.0
3,945,322	-	hdfR	b4480	0.20	+0.9
3,945,322	-	hdfR	b4480	0.20	+1.4
3,945,390	-	hdfR	b4480	0.28	+1.2
3,945,392	+	hdfR	b4480	0.29	+1.2
3,945,392	+	hdfR	b4480	0.29	+1.3
3,945,402	-	hdfR	b4480	0.30	+2.3
3,945,402	-	hdfR	b4480	0.30	+0.2
3,945,543	+	hdfR	b4480	0.47	+2.5
3,945,543	+	hdfR	b4480	0.47	+1.2
3,945,551	-	hdfR	b4480	0.48	+0.8
3,945,744	-	hdfR	b4480	0.71	+1.1
3,945,783	+	hdfR	b4480	0.75	+1.9
3,945,783	+	hdfR	b4480	0.75	+0.9
3,945,897	+	hdfR	b4480	0.89	+1.4
3,945,902	+	hdfR	b4480	0.89	+1.3
3,945,914	-				+2.1
3,946,030	-				+1.0
3,946,030	-				+0.2
3,946,045	+				+0.9
3,946,056	+				+0.4
3,946,058	+				-0.1
3,946,064	-				+0.3
3,946,071	+				+0.5
3,946,102	+				+0.1
3,946,102	+				+0.7
3,946,127	-				+0.9
3,946,176	-	yifE	b3764	0.20	+0.8
3,946,179	-	yifE	b3764	0.21	+0.3
3,946,200	+	yifE	b3764	0.27	+0.7
3,946,281	-	yifE	b3764	0.51	+0.7
3,946,281	-	yifE	b3764	0.51	+1.0
3,946,295	-	yifE	b3764	0.55	+1.4
3,946,309	+	yifE	b3764	0.59	+2.1
3,946,345	+	yifE	b3764	0.70	+2.3
3,946,360	+	yifE	b3764	0.74	+1.0
3,946,360	+	yifE	b3764	0.74	+1.1
3,946,366	-	yifE	b3764	0.76	+1.0
3,946,366	-	yifE	b3764	0.76	+1.7
3,946,525	+				-0.2
3,946,528	-				+0.2
3,946,528	-				+0.2
3,946,575	-				+0.7
3,946,575	-				-1.0
3,946,621	-				-0.2
3,946,621	-				+0.4
3,946,628	+	yifB	b3765	0.10	-0.4
3,946,632	+	yifB	b3765	0.11	-0.6
3,946,706	+	yifB	b3765	0.15	-0.3
3,946,761	+	yifB	b3765	0.19	-1.2
3,946,883	-	yifB	b3765	0.27	+0.4
3,946,903	-	yifB	b3765	0.28	+0.8