Strain Fitness in Escherichia coli BW25113 around b3141

Experiment: Ciprofloxacin Hydrochloride 0.0003 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ciprofloxacin Hydrochloride 0.0003 mM
3,283,298	-	agaC	b3139	0.74	-0.3
3,283,298	-	agaC	b3139	0.74	-0.2
3,283,316	+	agaC	b3139	0.76	-1.8
3,283,317	-	agaC	b3139	0.76	-0.0
3,283,334	-	agaC	b3139	0.78	+0.5
3,283,359	+	agaC	b3139	0.81	-1.2
3,283,359	+	agaC	b3139	0.81	-1.2
3,283,362	+	agaC	b3139	0.81	-0.1
3,283,498	-				-0.8
3,283,534	+				+0.6
3,283,534	+				+2.2
3,283,562	-				-2.0
3,283,696	-	agaD	b3140	0.25	-0.4
3,283,714	+	agaD	b3140	0.27	-0.1
3,283,714	+	agaD	b3140	0.27	+0.1
3,283,719	+	agaD	b3140	0.28	+0.1
3,283,785	-	agaD	b3140	0.36	+0.7
3,283,880	+	agaD	b3140	0.48	-2.6
3,283,880	+	agaD	b3140	0.48	-0.9
3,283,947	+	agaD	b3140	0.56	-3.1
3,283,947	+	agaD	b3140	0.56	-2.3
3,283,961	+	agaD	b3140	0.58	-4.1
3,284,068	+	agaD	b3140	0.72	-2.8
3,284,118	-	agaD	b3140	0.78	+0.7
3,284,118	-	agaD	b3140	0.78	+1.3
3,284,166	+	agaD	b3140	0.84	-1.6
3,284,166	+	agaD	b3140	0.84	-0.8
3,284,177	+	agaD	b3140	0.85	-1.4
3,284,179	+	agaD	b3140	0.86	-1.8
3,284,179	+	agaD	b3140	0.86	-0.9
3,284,179	+	agaD	b3140	0.86	+0.4
3,284,179	+	agaD	b3140	0.86	+0.5
3,284,179	+	agaD	b3140	0.86	+0.4
3,284,179	+	agaD	b3140	0.86	+1.1
3,284,179	+	agaD	b3140	0.86	+1.2
3,284,182	+	agaD	b3140	0.86	+1.8
3,284,182	+	agaD	b3140	0.86	-0.9
3,284,185	-	agaD	b3140	0.86	+0.4
3,284,197	-	agaD	b3140	0.88	-0.3
3,284,255	+				-2.6
3,284,255	+				-1.6
3,284,321	+				-0.1
3,284,354	-				+0.8
3,284,355	-				+1.3
3,284,355	-				-3.1
3,284,369	+	agaI	b3141	0.10	-1.2
3,284,528	+	agaI	b3141	0.31	-1.4
3,284,528	+	agaI	b3141	0.31	-1.0
3,284,533	+	agaI	b3141	0.32	+2.5
3,284,618	+	agaI	b3141	0.43	-1.3
3,284,659	-	agaI	b3141	0.49	-0.7
3,284,766	-	agaI	b3141	0.63	-1.8
3,284,785	+	agaI	b3141	0.65	+0.3
3,284,807	-	agaI	b3141	0.68	-2.3
3,284,835	+	agaI	b3141	0.72	-0.5
3,284,871	-	agaI	b3141	0.77	+2.2
3,284,871	-	agaI	b3141	0.77	-0.2
3,284,934	+	agaI	b3141	0.85	-1.2
3,284,934	+	agaI	b3141	0.85	-1.0
3,284,973	+				-2.9
3,284,973	+				+1.6
3,284,978	+				-1.1
3,284,978	+				-0.5
3,284,978	+				+0.8
3,284,981	+				-0.4
3,284,981	+				+0.0
3,284,981	+				-0.6
3,284,981	+				+0.1
3,284,981	-				+1.9
3,284,981	-				+1.4
3,285,002	+				-1.3
3,285,004	+				+0.5
3,285,004	+				-1.9
3,285,004	+				-0.2
3,285,004	+				+0.0
3,285,025	-				+1.4
3,285,025	-				+1.4
3,285,036	+				-2.3
3,285,124	+				+2.4
3,285,124	+				-1.4
3,285,126	+				-3.2
3,285,126	+				-0.9
3,285,129	+				-1.6
3,285,238	-				+1.4
3,285,424	-				+1.4
3,285,424	-				-2.6
3,285,480	-				+1.4
3,285,485	-				+0.4
3,285,603	-	yraH	b3142	0.26	+0.4
3,285,614	-	yraH	b3142	0.28	+1.4
3,285,619	-	yraH	b3142	0.29	-0.6
3,285,665	-	yraH	b3142	0.37	+0.2
3,285,672	+	yraH	b3142	0.38	-0.2
3,285,672	+	yraH	b3142	0.38	+1.4
3,285,676	-	yraH	b3142	0.39	-1.4
3,285,676	-	yraH	b3142	0.39	-0.6
3,285,687	+	yraH	b3142	0.41	+0.4
3,285,689	-	yraH	b3142	0.41	-0.6
3,285,689	-	yraH	b3142	0.41	+0.4
3,285,694	-	yraH	b3142	0.42	-0.5
3,285,697	+	yraH	b3142	0.43	+1.4
3,285,697	-	yraH	b3142	0.43	+0.8
3,285,697	-	yraH	b3142	0.43	+0.2
3,285,705	-	yraH	b3142	0.44	-1.2
3,285,705	-	yraH	b3142	0.44	-1.8
3,285,708	-	yraH	b3142	0.44	-0.9
3,285,715	+	yraH	b3142	0.46	-0.2
3,285,715	+	yraH	b3142	0.46	-0.6
3,285,731	+	yraH	b3142	0.48	-2.0
3,285,731	+	yraH	b3142	0.48	-1.9
3,285,764	+	yraH	b3142	0.54	-3.5
3,285,771	-	yraH	b3142	0.55	+3.4
3,285,771	-	yraH	b3142	0.55	+1.4
3,285,771	-	yraH	b3142	0.55	-1.6
3,285,771	-	yraH	b3142	0.55	+1.7
3,285,774	-	yraH	b3142	0.56	+2.4
3,285,779	-	yraH	b3142	0.57	-0.6
3,285,779	-	yraH	b3142	0.57	+3.4
3,285,819	+	yraH	b3142	0.63	-1.2
3,285,819	+	yraH	b3142	0.63	-0.5
3,285,819	+	yraH	b3142	0.63	-0.7
3,285,821	+	yraH	b3142	0.64	+0.6
3,285,829	-	yraH	b3142	0.65	+2.1
3,285,836	-	yraH	b3142	0.66	-0.9
3,285,836	-	yraH	b3142	0.66	+2.4
3,285,858	+	yraH	b3142	0.70	-0.1
3,285,860	+	yraH	b3142	0.70	-0.8
3,285,888	-	yraH	b3142	0.75	-2.7
3,285,891	-	yraH	b3142	0.76	-1.4
3,285,895	+	yraH	b3142	0.76	-4.0
3,285,895	+	yraH	b3142	0.76	+1.1
3,285,903	-	yraH	b3142	0.78	-0.4
3,285,903	-	yraH	b3142	0.78	-2.2
3,285,913	-	yraH	b3142	0.79	+1.4
3,285,913	-	yraH	b3142	0.79	+1.4
3,285,915	+	yraH	b3142	0.80	-1.3
3,285,935	-	yraH	b3142	0.83	+3.3
3,285,935	-	yraH	b3142	0.83	-0.6
3,285,939	+	yraH	b3142	0.84	-1.3
3,285,940	-	yraH	b3142	0.84	-0.6
3,285,940	-	yraH	b3142	0.84	+0.4
3,285,953	+	yraH	b3142	0.86	-3.0
3,285,954	+	yraH	b3142	0.86	-0.2
3,285,957	+	yraH	b3142	0.87	-1.6
3,285,958	-	yraH	b3142	0.87	-3.0
3,285,961	+	yraH	b3142	0.88	-1.1
3,285,962	+	yraH	b3142	0.88	-0.3
3,285,971	+	yraH	b3142	0.89	+0.2
3,285,987	+				+0.3
3,285,987	+				-3.2
3,285,988	+				-0.8
3,285,997	-				+1.4
3,286,001	+				-1.9
3,286,010	+				+0.6
3,286,028	+				-1.6
3,286,028	+				+1.0
3,286,035	+				-3.4
3,286,041	+				-4.4
3,286,046	+				+0.4
3,286,046	+				-0.9