Experiment: Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6032 and Atu6033 overlap by 1 nucleotides Atu6033 and Atu6034 are separated by 17 nucleotides Atu6034 and Atu6035 are separated by 14 nucleotides
Atu6032: Atu6032 - conjugal transfer protein, at 42,899 to 43,375
Atu6032
Atu6033: Atu6033 - conjugal transfer protein, at 43,375 to 44,229
Atu6033
Atu6034: Atu6034 - conjugal transfer protein, at 44,247 to 44,909
Atu6034
Atu6035: Atu6035 - conjugal transfer protein, at 44,924 to 46,120
Atu6035
Position (kb) 44
45 Strain fitness (log2 ratio) -1
0
1
2 at 43.272 kb on - strand, within Atu6032 at 43.277 kb on + strand, within Atu6032 at 43.310 kb on + strand, within Atu6032 at 43.311 kb on - strand, within Atu6032 at 43.311 kb on - strand, within Atu6032 at 43.311 kb on - strand, within Atu6032 at 43.324 kb on - strand, within Atu6032 at 43.383 kb on - strand at 43.429 kb on + strand at 43.437 kb on - strand at 43.448 kb on + strand at 43.509 kb on - strand, within Atu6033 at 43.589 kb on + strand, within Atu6033 at 43.629 kb on - strand, within Atu6033 at 43.725 kb on - strand, within Atu6033 at 43.781 kb on + strand, within Atu6033 at 43.808 kb on + strand, within Atu6033 at 43.818 kb on + strand, within Atu6033 at 43.826 kb on - strand, within Atu6033 at 43.826 kb on - strand, within Atu6033 at 43.883 kb on + strand, within Atu6033 at 43.891 kb on + strand, within Atu6033 at 44.010 kb on + strand, within Atu6033 at 44.010 kb on - strand, within Atu6033 at 44.018 kb on - strand, within Atu6033 at 44.095 kb on + strand, within Atu6033 at 44.260 kb on + strand at 44.279 kb on + strand at 44.279 kb on + strand at 44.287 kb on - strand at 44.327 kb on + strand, within Atu6034 at 44.421 kb on + strand, within Atu6034 at 44.492 kb on + strand, within Atu6034 at 44.542 kb on + strand, within Atu6034 at 44.550 kb on - strand, within Atu6034 at 44.550 kb on - strand, within Atu6034 at 44.560 kb on - strand, within Atu6034 at 44.585 kb on - strand, within Atu6034 at 44.597 kb on + strand, within Atu6034 at 44.672 kb on + strand, within Atu6034 at 44.680 kb on - strand, within Atu6034 at 44.696 kb on - strand, within Atu6034 at 44.696 kb on - strand, within Atu6034 at 44.706 kb on - strand, within Atu6034 at 44.727 kb on - strand, within Atu6034 at 44.734 kb on + strand, within Atu6034 at 44.734 kb on + strand, within Atu6034 at 44.734 kb on + strand, within Atu6034 at 44.734 kb on + strand, within Atu6034 at 44.734 kb on + strand, within Atu6034 at 44.742 kb on - strand, within Atu6034 at 44.742 kb on - strand, within Atu6034 at 44.742 kb on - strand, within Atu6034 at 44.742 kb on - strand, within Atu6034 at 44.742 kb on - strand, within Atu6034 at 44.742 kb on - strand, within Atu6034 at 44.872 kb on + strand at 44.894 kb on + strand at 44.894 kb on + strand at 44.894 kb on + strand at 44.902 kb on - strand at 44.956 kb on - strand at 45.008 kb on - strand at 45.034 kb on - strand at 45.071 kb on + strand, within Atu6035 at 45.100 kb on - strand, within Atu6035 at 45.123 kb on + strand, within Atu6035 at 45.143 kb on - strand, within Atu6035 at 45.148 kb on - strand, within Atu6035 at 45.235 kb on - strand, within Atu6035 at 45.250 kb on + strand, within Atu6035 at 45.258 kb on - strand, within Atu6035 at 45.268 kb on - strand, within Atu6035 at 45.358 kb on - strand, within Atu6035 at 45.370 kb on + strand, within Atu6035 at 45.413 kb on + strand, within Atu6035 at 45.446 kb on + strand, within Atu6035 at 45.451 kb on + strand, within Atu6035 at 45.479 kb on - strand, within Atu6035 at 45.488 kb on - strand, within Atu6035 at 45.504 kb on + strand, within Atu6035 at 45.523 kb on + strand, within Atu6035 at 45.536 kb on - strand, within Atu6035 at 45.615 kb on + strand, within Atu6035 at 45.769 kb on + strand, within Atu6035 at 45.779 kb on - strand, within Atu6035
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 43,272 - Atu6032 0.78 +0.4 43,277 + Atu6032 0.79 -0.1 43,310 + Atu6032 0.86 +0.2 43,311 - Atu6032 0.86 -0.1 43,311 - Atu6032 0.86 +0.1 43,311 - Atu6032 0.86 -0.1 43,324 - Atu6032 0.89 +0.3 43,383 - -0.0 43,429 + +0.1 43,437 - -0.7 43,448 + +0.3 43,509 - Atu6033 0.16 -1.1 43,589 + Atu6033 0.25 -0.9 43,629 - Atu6033 0.30 -0.4 43,725 - Atu6033 0.41 -0.3 43,781 + Atu6033 0.47 -0.5 43,808 + Atu6033 0.51 +2.0 43,818 + Atu6033 0.52 -0.5 43,826 - Atu6033 0.53 -0.6 43,826 - Atu6033 0.53 -0.3 43,883 + Atu6033 0.59 +0.5 43,891 + Atu6033 0.60 +0.3 44,010 + Atu6033 0.74 -1.1 44,010 - Atu6033 0.74 +0.5 44,018 - Atu6033 0.75 +0.3 44,095 + Atu6033 0.84 -0.1 44,260 + -0.5 44,279 + +1.1 44,279 + -0.4 44,287 - +1.6 44,327 + Atu6034 0.12 +0.1 44,421 + Atu6034 0.26 +0.3 44,492 + Atu6034 0.37 +1.1 44,542 + Atu6034 0.44 -0.1 44,550 - Atu6034 0.46 -0.4 44,550 - Atu6034 0.46 +0.2 44,560 - Atu6034 0.47 -0.1 44,585 - Atu6034 0.51 +0.2 44,597 + Atu6034 0.53 -1.2 44,672 + Atu6034 0.64 -0.2 44,680 - Atu6034 0.65 -0.6 44,696 - Atu6034 0.68 +0.0 44,696 - Atu6034 0.68 +0.0 44,706 - Atu6034 0.69 +1.8 44,727 - Atu6034 0.72 +0.0 44,734 + Atu6034 0.73 -0.3 44,734 + Atu6034 0.73 -0.2 44,734 + Atu6034 0.73 +0.0 44,734 + Atu6034 0.73 -0.3 44,734 + Atu6034 0.73 +1.6 44,742 - Atu6034 0.75 +0.2 44,742 - Atu6034 0.75 +0.8 44,742 - Atu6034 0.75 +0.3 44,742 - Atu6034 0.75 -1.1 44,742 - Atu6034 0.75 +0.7 44,742 - Atu6034 0.75 +0.8 44,872 + -0.6 44,894 + +0.4 44,894 + -0.3 44,894 + +0.0 44,902 - +0.4 44,956 - +0.1 45,008 - +0.1 45,034 - -0.4 45,071 + Atu6035 0.12 +0.0 45,100 - Atu6035 0.15 -0.1 45,123 + Atu6035 0.17 -0.3 45,143 - Atu6035 0.18 -0.7 45,148 - Atu6035 0.19 -0.1 45,235 - Atu6035 0.26 -0.6 45,250 + Atu6035 0.27 +0.2 45,258 - Atu6035 0.28 +0.2 45,268 - Atu6035 0.29 -0.3 45,358 - Atu6035 0.36 +0.7 45,370 + Atu6035 0.37 -0.0 45,413 + Atu6035 0.41 -1.0 45,446 + Atu6035 0.44 +0.7 45,451 + Atu6035 0.44 -0.5 45,479 - Atu6035 0.46 +0.1 45,488 - Atu6035 0.47 +0.4 45,504 + Atu6035 0.48 -0.4 45,523 + Atu6035 0.50 +0.0 45,536 - Atu6035 0.51 +0.5 45,615 + Atu6035 0.58 +2.0 45,769 + Atu6035 0.71 -0.2 45,779 - Atu6035 0.71 +0.4
Or see this region's nucleotide sequence