Experiment: Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0958 and Atu0959 are separated by 176 nucleotides Atu0959 and Atu0960 are separated by 7 nucleotides Atu0960 and Atu0961 are separated by 258 nucleotides
Atu0958: Atu0958 - hypothetical protein, at 947,277 to 948,131
Atu0958
Atu0959: Atu0959 - hypothetical protein, at 948,308 to 948,703
Atu0959
Atu0960: Atu0960 - MFS permease, at 948,711 to 949,817
Atu0960
Atu0961: Atu0961 - hypothetical protein, at 950,076 to 950,690
Atu0961
Position (kb) 948
949
950 Strain fitness (log2 ratio) -2
-1
0
1
2 at 947.724 kb on - strand, within Atu0958 at 947.761 kb on - strand, within Atu0958 at 947.826 kb on - strand, within Atu0958 at 947.831 kb on - strand, within Atu0958 at 947.831 kb on - strand, within Atu0958 at 947.865 kb on + strand, within Atu0958 at 947.865 kb on + strand, within Atu0958 at 947.870 kb on + strand, within Atu0958 at 947.873 kb on - strand, within Atu0958 at 947.959 kb on - strand, within Atu0958 at 947.967 kb on - strand, within Atu0958 at 948.022 kb on + strand, within Atu0958 at 948.030 kb on - strand, within Atu0958 at 948.030 kb on - strand, within Atu0958 at 948.056 kb on + strand at 948.064 kb on - strand at 948.066 kb on + strand at 948.074 kb on - strand at 948.089 kb on - strand at 948.124 kb on + strand at 948.137 kb on + strand at 948.139 kb on + strand at 948.230 kb on - strand at 948.317 kb on + strand at 948.317 kb on + strand at 948.317 kb on + strand at 948.325 kb on - strand at 948.370 kb on + strand, within Atu0959 at 948.417 kb on + strand, within Atu0959 at 948.417 kb on + strand, within Atu0959 at 948.419 kb on + strand, within Atu0959 at 948.425 kb on - strand, within Atu0959 at 948.586 kb on + strand, within Atu0959 at 948.711 kb on - strand at 948.773 kb on + strand at 948.821 kb on - strand at 948.883 kb on + strand, within Atu0960 at 948.891 kb on + strand, within Atu0960 at 948.894 kb on + strand, within Atu0960 at 949.161 kb on - strand, within Atu0960 at 949.182 kb on - strand, within Atu0960 at 949.219 kb on + strand, within Atu0960 at 949.311 kb on + strand, within Atu0960 at 949.320 kb on + strand, within Atu0960 at 949.320 kb on + strand, within Atu0960 at 949.402 kb on - strand, within Atu0960 at 949.580 kb on - strand, within Atu0960 at 949.580 kb on - strand, within Atu0960 at 949.587 kb on + strand, within Atu0960 at 949.595 kb on - strand, within Atu0960 at 949.600 kb on - strand, within Atu0960 at 949.602 kb on - strand, within Atu0960 at 949.629 kb on + strand, within Atu0960 at 949.678 kb on + strand, within Atu0960 at 949.707 kb on - strand at 949.711 kb on + strand at 949.719 kb on - strand at 949.736 kb on - strand at 949.784 kb on - strand at 949.784 kb on - strand at 949.866 kb on + strand at 949.874 kb on - strand at 949.905 kb on - strand at 950.161 kb on + strand, within Atu0961 at 950.291 kb on + strand, within Atu0961 at 950.301 kb on + strand, within Atu0961 at 950.405 kb on - strand, within Atu0961 at 950.429 kb on + strand, within Atu0961 at 950.462 kb on + strand, within Atu0961 at 950.613 kb on + strand, within Atu0961 at 950.621 kb on - strand, within Atu0961 at 950.740 kb on - strand at 950.756 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days remove 947,724 - Atu0958 0.52 -0.2 947,761 - Atu0958 0.57 -0.2 947,826 - Atu0958 0.64 -0.1 947,831 - Atu0958 0.65 -0.8 947,831 - Atu0958 0.65 +0.4 947,865 + Atu0958 0.69 -0.4 947,865 + Atu0958 0.69 -0.4 947,870 + Atu0958 0.69 -0.3 947,873 - Atu0958 0.70 -0.6 947,959 - Atu0958 0.80 -0.2 947,967 - Atu0958 0.81 -1.2 948,022 + Atu0958 0.87 +2.6 948,030 - Atu0958 0.88 +0.2 948,030 - Atu0958 0.88 -0.4 948,056 + +0.2 948,064 - +0.0 948,066 + +0.2 948,074 - -0.3 948,089 - +0.1 948,124 + +0.4 948,137 + -0.2 948,139 + -0.5 948,230 - -0.2 948,317 + +0.3 948,317 + +0.8 948,317 + +0.6 948,325 - -0.0 948,370 + Atu0959 0.16 -0.4 948,417 + Atu0959 0.28 +0.6 948,417 + Atu0959 0.28 -0.3 948,419 + Atu0959 0.28 -0.2 948,425 - Atu0959 0.30 +0.8 948,586 + Atu0959 0.70 -0.5 948,711 - -0.9 948,773 + +0.3 948,821 - +0.7 948,883 + Atu0960 0.16 -0.2 948,891 + Atu0960 0.16 -1.2 948,894 + Atu0960 0.17 -0.9 949,161 - Atu0960 0.41 -1.8 949,182 - Atu0960 0.43 -1.1 949,219 + Atu0960 0.46 -0.3 949,311 + Atu0960 0.54 -0.4 949,320 + Atu0960 0.55 -0.5 949,320 + Atu0960 0.55 -0.2 949,402 - Atu0960 0.62 +0.0 949,580 - Atu0960 0.79 -0.2 949,580 - Atu0960 0.79 +0.0 949,587 + Atu0960 0.79 -2.2 949,595 - Atu0960 0.80 +0.7 949,600 - Atu0960 0.80 -0.1 949,602 - Atu0960 0.80 -0.5 949,629 + Atu0960 0.83 -0.0 949,678 + Atu0960 0.87 -0.6 949,707 - +0.4 949,711 + -0.9 949,719 - -0.2 949,736 - +0.4 949,784 - -0.7 949,784 - +0.6 949,866 + +0.5 949,874 - -0.3 949,905 - -1.0 950,161 + Atu0961 0.14 +0.1 950,291 + Atu0961 0.35 +1.1 950,301 + Atu0961 0.37 -0.6 950,405 - Atu0961 0.53 -1.6 950,429 + Atu0961 0.57 -0.2 950,462 + Atu0961 0.63 -1.4 950,613 + Atu0961 0.87 +0.0 950,621 - Atu0961 0.89 +1.3 950,740 - -0.1 950,756 - -0.2
Or see this region's nucleotide sequence