Strain Fitness in Pseudomonas putida KT2440 around PP_3510

Experiment: Delta-Undecalactone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3508 and PP_3509 are separated by 406 nucleotidesPP_3509 and PP_3510 overlap by 4 nucleotidesPP_3510 and PP_3511 are separated by 145 nucleotides PP_3508: PP_3508 - Protein CobW, at 3,980,634 to 3,981,701 _3508 PP_3509: PP_3509 - Glyoxalase family protein, at 3,982,108 to 3,982,485 _3509 PP_3510: PP_3510 - conserved protein of unknown function, at 3,982,482 to 3,982,841 _3510 PP_3511: PP_3511 - Branched-chain-amino-acid aminotransferase, at 3,982,987 to 3,984,006 _3511 Position (kb) 3982 3983Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3981.923 kb on + strandat 3981.923 kb on + strandat 3981.924 kb on - strandat 3981.924 kb on - strandat 3981.950 kb on + strandat 3981.950 kb on + strandat 3981.950 kb on + strandat 3981.950 kb on + strandat 3981.967 kb on - strandat 3982.073 kb on + strandat 3982.073 kb on + strandat 3982.127 kb on + strandat 3982.127 kb on + strandat 3982.128 kb on - strandat 3982.128 kb on - strandat 3982.142 kb on + strandat 3982.234 kb on + strand, within PP_3509at 3982.234 kb on + strand, within PP_3509at 3982.360 kb on - strand, within PP_3509at 3982.360 kb on - strand, within PP_3509at 3982.360 kb on - strand, within PP_3509at 3982.634 kb on + strand, within PP_3510at 3982.635 kb on - strand, within PP_3510at 3982.635 kb on - strand, within PP_3510at 3982.637 kb on + strandat 3982.637 kb on + strand, within PP_3510at 3982.700 kb on + strand, within PP_3510at 3982.701 kb on - strand, within PP_3510at 3982.701 kb on - strandat 3982.701 kb on - strand, within PP_3510at 3982.701 kb on - strand, within PP_3510at 3982.701 kb on - strand, within PP_3510at 3982.701 kb on - strand, within PP_3510at 3982.768 kb on + strand, within PP_3510at 3982.768 kb on + strand, within PP_3510at 3982.768 kb on + strand, within PP_3510at 3982.768 kb on + strand, within PP_3510at 3982.769 kb on - strand, within PP_3510at 3982.769 kb on - strand, within PP_3510at 3982.769 kb on - strand, within PP_3510at 3982.769 kb on - strand, within PP_3510at 3982.769 kb on - strand, within PP_3510at 3982.769 kb on - strand, within PP_3510at 3982.769 kb on - strand, within PP_3510at 3982.774 kb on - strand, within PP_3510at 3982.774 kb on - strand, within PP_3510at 3982.774 kb on - strand, within PP_3510at 3982.774 kb on - strand, within PP_3510at 3982.774 kb on - strand, within PP_3510at 3982.859 kb on - strandat 3982.859 kb on - strandat 3982.859 kb on - strandat 3982.861 kb on + strandat 3982.862 kb on - strandat 3982.862 kb on - strandat 3982.916 kb on + strandat 3982.916 kb on + strandat 3982.916 kb on + strandat 3982.916 kb on + strandat 3982.917 kb on - strandat 3982.917 kb on - strandat 3982.917 kb on - strandat 3982.917 kb on - strandat 3982.917 kb on - strandat 3982.919 kb on + strandat 3982.919 kb on + strandat 3982.919 kb on + strandat 3982.919 kb on + strandat 3982.919 kb on + strandat 3982.919 kb on + strandat 3982.920 kb on - strandat 3982.920 kb on - strandat 3982.920 kb on - strandat 3982.938 kb on + strandat 3982.938 kb on + strandat 3982.938 kb on + strandat 3982.939 kb on - strandat 3982.939 kb on - strandat 3982.940 kb on + strandat 3982.940 kb on + strandat 3982.941 kb on - strandat 3983.005 kb on - strandat 3983.030 kb on - strandat 3983.050 kb on + strandat 3983.051 kb on - strandat 3983.108 kb on + strand, within PP_3511at 3983.108 kb on + strand, within PP_3511at 3983.108 kb on + strand, within PP_3511at 3983.108 kb on + strand, within PP_3511at 3983.109 kb on - strand, within PP_3511at 3983.109 kb on - strand, within PP_3511at 3983.109 kb on - strand, within PP_3511at 3983.109 kb on - strand, within PP_3511at 3983.357 kb on - strand, within PP_3511at 3983.452 kb on + strand, within PP_3511at 3983.548 kb on + strand, within PP_3511at 3983.548 kb on + strand, within PP_3511at 3983.548 kb on + strand, within PP_3511at 3983.549 kb on - strand, within PP_3511at 3983.549 kb on - strand, within PP_3511at 3983.608 kb on + strand, within PP_3511at 3983.609 kb on - strand, within PP_3511

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Per-strain Table

Position Strand Gene LocusTag Fraction Delta-Undecalactone (C)
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3,981,923 + -1.5
3,981,923 + -0.2
3,981,924 - +0.2
3,981,924 - -0.1
3,981,950 + +0.8
3,981,950 + +0.5
3,981,950 + -2.5
3,981,950 + +0.8
3,981,967 - -0.2
3,982,073 + +0.3
3,982,073 + +0.3
3,982,127 + -0.2
3,982,127 + -1.2
3,982,128 - +0.1
3,982,128 - +0.1
3,982,142 + +0.1
3,982,234 + PP_3509 0.33 +0.7
3,982,234 + PP_3509 0.33 +0.1
3,982,360 - PP_3509 0.67 -0.8
3,982,360 - PP_3509 0.67 -0.1
3,982,360 - PP_3509 0.67 +0.6
3,982,634 + PP_3510 0.42 -1.2
3,982,635 - PP_3510 0.42 -0.1
3,982,635 - PP_3510 0.42 -0.1
3,982,637 + -0.5
3,982,637 + PP_3510 0.43 -0.4
3,982,700 + PP_3510 0.61 +1.4
3,982,701 - PP_3510 0.61 -0.2
3,982,701 - +0.6
3,982,701 - PP_3510 0.61 +0.9
3,982,701 - PP_3510 0.61 -0.1
3,982,701 - PP_3510 0.61 -0.4
3,982,701 - PP_3510 0.61 +0.2
3,982,768 + PP_3510 0.79 +0.3
3,982,768 + PP_3510 0.79 -0.3
3,982,768 + PP_3510 0.79 -1.4
3,982,768 + PP_3510 0.79 -0.4
3,982,769 - PP_3510 0.80 +0.1
3,982,769 - PP_3510 0.80 -0.2
3,982,769 - PP_3510 0.80 -0.1
3,982,769 - PP_3510 0.80 +0.4
3,982,769 - PP_3510 0.80 -0.1
3,982,769 - PP_3510 0.80 +0.3
3,982,769 - PP_3510 0.80 +0.2
3,982,774 - PP_3510 0.81 -0.4
3,982,774 - PP_3510 0.81 +1.0
3,982,774 - PP_3510 0.81 +0.3
3,982,774 - PP_3510 0.81 +0.0
3,982,774 - PP_3510 0.81 -0.1
3,982,859 - -0.8
3,982,859 - -0.5
3,982,859 - +0.2
3,982,861 + -1.0
3,982,862 - +0.1
3,982,862 - -0.1
3,982,916 + -0.4
3,982,916 + -0.1
3,982,916 + -1.2
3,982,916 + -0.3
3,982,917 - -2.7
3,982,917 - -3.5
3,982,917 - -4.8
3,982,917 - -2.9
3,982,917 - -2.5
3,982,919 + -0.4
3,982,919 + -0.8
3,982,919 + -1.2
3,982,919 + -0.2
3,982,919 + -1.1
3,982,919 + +0.2
3,982,920 - -2.6
3,982,920 - -4.4
3,982,920 - -2.8
3,982,938 + +0.0
3,982,938 + -1.1
3,982,938 + -1.0
3,982,939 - -2.1
3,982,939 - -4.1
3,982,940 + +0.6
3,982,940 + +0.1
3,982,941 - -1.6
3,983,005 - -3.8
3,983,030 - -1.7
3,983,050 + -4.3
3,983,051 - -1.5
3,983,108 + PP_3511 0.12 -3.9
3,983,108 + PP_3511 0.12 -4.5
3,983,108 + PP_3511 0.12 -4.2
3,983,108 + PP_3511 0.12 -4.6
3,983,109 - PP_3511 0.12 -2.8
3,983,109 - PP_3511 0.12 -3.8
3,983,109 - PP_3511 0.12 -3.6
3,983,109 - PP_3511 0.12 -4.3
3,983,357 - PP_3511 0.36 -2.3
3,983,452 + PP_3511 0.46 -5.3
3,983,548 + PP_3511 0.55 -4.3
3,983,548 + PP_3511 0.55 -3.9
3,983,548 + PP_3511 0.55 -1.8
3,983,549 - PP_3511 0.55 -3.5
3,983,549 - PP_3511 0.55 -3.3
3,983,608 + PP_3511 0.61 -4.2
3,983,609 - PP_3511 0.61 -4.2

Or see this region's nucleotide sequence