Strain Fitness in Pseudomonas putida KT2440 around PP_0766

Experiment: Delta-Undecalactone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0765 and PP_0766 are separated by 25 nucleotidesPP_0766 and PP_0767 are separated by 327 nucleotides PP_0765: PP_0765 - putative adhesin (DUF1302) (from data), at 880,486 to 882,372 _0765 PP_0766: PP_0766 - adhesin-associated sorting protein (DUF1329) (from data), at 882,398 to 883,762 _0766 PP_0767: PP_0767 - Transcriptional regulator, LuxR family, at 884,090 to 886,807 _0767 Position (kb) 882 883 884Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 881.401 kb on + strand, within PP_0765at 881.401 kb on + strand, within PP_0765at 881.401 kb on + strand, within PP_0765at 881.402 kb on - strand, within PP_0765at 881.402 kb on - strand, within PP_0765at 881.402 kb on - strand, within PP_0765at 881.403 kb on + strand, within PP_0765at 881.403 kb on + strand, within PP_0765at 881.403 kb on + strand, within PP_0765at 881.403 kb on + strand, within PP_0765at 881.403 kb on + strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.404 kb on - strand, within PP_0765at 881.438 kb on - strand, within PP_0765at 881.449 kb on + strand, within PP_0765at 881.449 kb on + strand, within PP_0765at 881.449 kb on + strand, within PP_0765at 881.449 kb on + strand, within PP_0765at 881.449 kb on + strand, within PP_0765at 881.450 kb on - strand, within PP_0765at 881.450 kb on - strand, within PP_0765at 881.450 kb on - strand, within PP_0765at 881.562 kb on + strand, within PP_0765at 881.563 kb on - strand, within PP_0765at 881.572 kb on + strand, within PP_0765at 881.584 kb on + strand, within PP_0765at 881.605 kb on + strand, within PP_0765at 881.606 kb on - strand, within PP_0765at 881.694 kb on + strand, within PP_0765at 881.695 kb on - strand, within PP_0765at 881.695 kb on - strand, within PP_0765at 881.874 kb on - strand, within PP_0765at 881.874 kb on - strand, within PP_0765at 881.874 kb on - strand, within PP_0765at 881.874 kb on - strand, within PP_0765at 882.079 kb on + strand, within PP_0765at 882.080 kb on - strand, within PP_0765at 882.080 kb on - strand, within PP_0765at 882.128 kb on - strand, within PP_0765at 882.147 kb on + strand, within PP_0765at 882.274 kb on + strandat 882.274 kb on + strandat 882.274 kb on + strandat 882.274 kb on + strandat 882.275 kb on - strandat 882.275 kb on - strandat 882.275 kb on - strandat 882.276 kb on + strandat 882.293 kb on - strandat 882.316 kb on + strandat 882.316 kb on + strandat 882.317 kb on - strandat 882.317 kb on - strandat 882.370 kb on + strandat 882.370 kb on + strandat 882.371 kb on - strandat 882.371 kb on - strandat 882.371 kb on - strandat 882.376 kb on + strandat 882.376 kb on + strandat 882.376 kb on + strandat 882.376 kb on + strandat 882.376 kb on + strandat 882.377 kb on - strandat 882.675 kb on - strand, within PP_0766at 882.675 kb on - strand, within PP_0766at 882.675 kb on - strand, within PP_0766at 882.732 kb on - strand, within PP_0766at 882.732 kb on - strand, within PP_0766at 882.818 kb on - strand, within PP_0766at 882.990 kb on + strand, within PP_0766at 882.990 kb on + strand, within PP_0766at 882.991 kb on - strand, within PP_0766at 882.991 kb on - strand, within PP_0766at 882.992 kb on + strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 882.993 kb on - strand, within PP_0766at 883.035 kb on - strand, within PP_0766at 883.035 kb on - strand, within PP_0766at 883.067 kb on + strand, within PP_0766at 883.068 kb on - strand, within PP_0766at 883.068 kb on - strand, within PP_0766at 883.068 kb on - strand, within PP_0766at 883.068 kb on - strand, within PP_0766at 883.084 kb on + strand, within PP_0766at 883.169 kb on + strand, within PP_0766at 883.169 kb on + strand, within PP_0766at 883.170 kb on - strand, within PP_0766at 883.215 kb on - strand, within PP_0766at 883.249 kb on + strand, within PP_0766at 883.249 kb on + strand, within PP_0766at 883.250 kb on - strand, within PP_0766at 883.325 kb on + strand, within PP_0766at 883.325 kb on + strand, within PP_0766at 883.325 kb on + strand, within PP_0766at 883.326 kb on - strand, within PP_0766at 883.326 kb on - strand, within PP_0766at 883.326 kb on - strand, within PP_0766at 883.370 kb on + strand, within PP_0766at 883.371 kb on - strand, within PP_0766at 883.443 kb on + strand, within PP_0766at 883.444 kb on - strand, within PP_0766at 883.444 kb on - strand, within PP_0766at 883.478 kb on + strand, within PP_0766at 883.478 kb on + strand, within PP_0766at 883.479 kb on - strand, within PP_0766at 883.479 kb on - strand, within PP_0766at 883.479 kb on - strand, within PP_0766at 883.497 kb on - strand, within PP_0766at 883.539 kb on - strand, within PP_0766at 883.589 kb on + strand, within PP_0766at 883.589 kb on + strand, within PP_0766at 883.589 kb on + strand, within PP_0766at 883.590 kb on - strand, within PP_0766at 883.592 kb on + strand, within PP_0766at 883.592 kb on + strand, within PP_0766at 883.592 kb on + strand, within PP_0766at 883.592 kb on + strand, within PP_0766at 883.592 kb on + strand, within PP_0766at 883.593 kb on - strand, within PP_0766at 883.593 kb on - strand, within PP_0766at 883.613 kb on + strand, within PP_0766at 883.613 kb on + strand, within PP_0766at 883.613 kb on + strand, within PP_0766at 883.614 kb on - strand, within PP_0766at 883.614 kb on - strand, within PP_0766at 883.631 kb on + strandat 883.631 kb on + strandat 883.632 kb on - strandat 883.632 kb on - strandat 883.653 kb on - strandat 883.692 kb on - strandat 883.860 kb on + strandat 883.861 kb on - strandat 883.926 kb on + strandat 883.926 kb on + strandat 883.927 kb on - strandat 883.927 kb on - strandat 883.999 kb on - strandat 884.317 kb on + strandat 884.317 kb on + strandat 884.522 kb on - strand, within PP_0767at 884.522 kb on - strand, within PP_0767at 884.549 kb on + strand, within PP_0767at 884.549 kb on + strand, within PP_0767at 884.699 kb on - strand, within PP_0767

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Per-strain Table

Position Strand Gene LocusTag Fraction Delta-Undecalactone (C)
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881,401 + PP_0765 0.48 -4.7
881,401 + PP_0765 0.48 -4.8
881,401 + PP_0765 0.48 -2.9
881,402 - PP_0765 0.49 -4.1
881,402 - PP_0765 0.49 -4.3
881,402 - PP_0765 0.49 -2.4
881,403 + PP_0765 0.49 -2.4
881,403 + PP_0765 0.49 -3.6
881,403 + PP_0765 0.49 -3.3
881,403 + PP_0765 0.49 -3.4
881,403 + PP_0765 0.49 -3.9
881,404 - PP_0765 0.49 -2.2
881,404 - PP_0765 0.49 -3.5
881,404 - PP_0765 0.49 -3.5
881,404 - PP_0765 0.49 -2.7
881,404 - PP_0765 0.49 -4.4
881,404 - PP_0765 0.49 -3.3
881,404 - PP_0765 0.49 -4.3
881,404 - PP_0765 0.49 -5.0
881,438 - PP_0765 0.50 -2.5
881,449 + PP_0765 0.51 -3.6
881,449 + PP_0765 0.51 -2.2
881,449 + PP_0765 0.51 -2.7
881,449 + PP_0765 0.51 -3.8
881,449 + PP_0765 0.51 -3.6
881,450 - PP_0765 0.51 -2.3
881,450 - PP_0765 0.51 -4.4
881,450 - PP_0765 0.51 -4.1
881,562 + PP_0765 0.57 -2.2
881,563 - PP_0765 0.57 -3.4
881,572 + PP_0765 0.58 -4.5
881,584 + PP_0765 0.58 -4.0
881,605 + PP_0765 0.59 -4.3
881,606 - PP_0765 0.59 -4.2
881,694 + PP_0765 0.64 -3.9
881,695 - PP_0765 0.64 -4.5
881,695 - PP_0765 0.64 -4.7
881,874 - PP_0765 0.74 -3.9
881,874 - PP_0765 0.74 -3.4
881,874 - PP_0765 0.74 -4.5
881,874 - PP_0765 0.74 -2.0
882,079 + PP_0765 0.84 -4.8
882,080 - PP_0765 0.84 -2.9
882,080 - PP_0765 0.84 -5.6
882,128 - PP_0765 0.87 -3.6
882,147 + PP_0765 0.88 -4.7
882,274 + -4.6
882,274 + -2.5
882,274 + -3.3
882,274 + -4.6
882,275 - -3.6
882,275 - -4.3
882,275 - -2.8
882,276 + -4.0
882,293 - -2.6
882,316 + -3.8
882,316 + -3.4
882,317 - -2.3
882,317 - -3.6
882,370 + -3.0
882,370 + -2.4
882,371 - -4.5
882,371 - -2.0
882,371 - -3.0
882,376 + -1.5
882,376 + -2.0
882,376 + -4.0
882,376 + -1.7
882,376 + -3.3
882,377 - -3.3
882,675 - PP_0766 0.20 -1.3
882,675 - PP_0766 0.20 -4.1
882,675 - PP_0766 0.20 -2.3
882,732 - PP_0766 0.24 -0.0
882,732 - PP_0766 0.24 -2.5
882,818 - PP_0766 0.31 -3.3
882,990 + PP_0766 0.43 -0.8
882,990 + PP_0766 0.43 -0.4
882,991 - PP_0766 0.43 -2.7
882,991 - PP_0766 0.43 -3.2
882,992 + PP_0766 0.44 -4.7
882,993 - PP_0766 0.44 -3.1
882,993 - PP_0766 0.44 -1.8
882,993 - PP_0766 0.44 -2.1
882,993 - PP_0766 0.44 -3.9
882,993 - PP_0766 0.44 -2.6
882,993 - PP_0766 0.44 -3.1
883,035 - PP_0766 0.47 -3.4
883,035 - PP_0766 0.47 -2.7
883,067 + PP_0766 0.49 -3.2
883,068 - PP_0766 0.49 -3.3
883,068 - PP_0766 0.49 -4.8
883,068 - PP_0766 0.49 -3.7
883,068 - PP_0766 0.49 -2.0
883,084 + PP_0766 0.50 -2.8
883,169 + PP_0766 0.56 -3.3
883,169 + PP_0766 0.56 -3.5
883,170 - PP_0766 0.57 -3.7
883,215 - PP_0766 0.60 -1.1
883,249 + PP_0766 0.62 -3.2
883,249 + PP_0766 0.62 -2.8
883,250 - PP_0766 0.62 -2.0
883,325 + PP_0766 0.68 -2.9
883,325 + PP_0766 0.68 -3.1
883,325 + PP_0766 0.68 -3.7
883,326 - PP_0766 0.68 -2.8
883,326 - PP_0766 0.68 -2.9
883,326 - PP_0766 0.68 -3.5
883,370 + PP_0766 0.71 -2.3
883,371 - PP_0766 0.71 -2.5
883,443 + PP_0766 0.77 -3.5
883,444 - PP_0766 0.77 -4.4
883,444 - PP_0766 0.77 -3.0
883,478 + PP_0766 0.79 -0.8
883,478 + PP_0766 0.79 -4.2
883,479 - PP_0766 0.79 -2.0
883,479 - PP_0766 0.79 -0.7
883,479 - PP_0766 0.79 -4.0
883,497 - PP_0766 0.81 -3.4
883,539 - PP_0766 0.84 -4.6
883,589 + PP_0766 0.87 -1.0
883,589 + PP_0766 0.87 -3.2
883,589 + PP_0766 0.87 -3.5
883,590 - PP_0766 0.87 -3.2
883,592 + PP_0766 0.87 -0.4
883,592 + PP_0766 0.87 -3.0
883,592 + PP_0766 0.87 -2.0
883,592 + PP_0766 0.87 -2.0
883,592 + PP_0766 0.87 -2.5
883,593 - PP_0766 0.88 -3.1
883,593 - PP_0766 0.88 -2.6
883,613 + PP_0766 0.89 -2.2
883,613 + PP_0766 0.89 -3.2
883,613 + PP_0766 0.89 -1.7
883,614 - PP_0766 0.89 -3.1
883,614 - PP_0766 0.89 -2.1
883,631 + -4.4
883,631 + -2.1
883,632 - -2.9
883,632 - -3.4
883,653 - -4.5
883,692 - -3.1
883,860 + -0.1
883,861 - -1.2
883,926 + -0.3
883,926 + +0.4
883,927 - -2.4
883,927 - -2.0
883,999 - -2.5
884,317 + -4.4
884,317 + -3.2
884,522 - PP_0767 0.16 -1.8
884,522 - PP_0767 0.16 -5.1
884,549 + PP_0767 0.17 -3.8
884,549 + PP_0767 0.17 -1.0
884,699 - PP_0767 0.22 -4.8

Or see this region's nucleotide sequence