Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5058 and PP_5059 are separated by 8 nucleotides PP_5059 and PP_5060 are separated by 43 nucleotides
PP_5058: PP_5058 - Carboxy-terminal-processing protease, at 5,764,020 to 5,765,336
_5058
PP_5059: PP_5059 - conserved exported protein of unknown function, at 5,765,345 to 5,766,112
_5059
PP_5060: PP_5060 - conserved protein of unknown function, at 5,766,156 to 5,770,871
_5060
Position (kb) 5765
5766
5767 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5764.363 kb on + strand, within PP_5058 at 5764.363 kb on + strand, within PP_5058 at 5764.363 kb on + strand, within PP_5058 at 5764.391 kb on - strand, within PP_5058 at 5764.625 kb on - strand, within PP_5058 at 5764.638 kb on + strand, within PP_5058 at 5764.644 kb on + strand, within PP_5058 at 5764.645 kb on - strand, within PP_5058 at 5764.912 kb on + strand, within PP_5058 at 5765.076 kb on + strand, within PP_5058 at 5765.079 kb on + strand, within PP_5058 at 5765.079 kb on + strand, within PP_5058 at 5765.079 kb on + strand, within PP_5058 at 5765.079 kb on + strand, within PP_5058 at 5765.080 kb on - strand, within PP_5058 at 5765.080 kb on - strand, within PP_5058 at 5765.080 kb on - strand, within PP_5058 at 5765.344 kb on + strand at 5765.344 kb on + strand at 5765.344 kb on + strand at 5765.345 kb on - strand at 5765.345 kb on - strand at 5765.345 kb on - strand at 5765.351 kb on + strand at 5765.352 kb on - strand at 5765.352 kb on - strand at 5765.417 kb on + strand at 5765.417 kb on + strand at 5765.417 kb on + strand at 5765.417 kb on + strand at 5765.418 kb on - strand at 5765.606 kb on + strand, within PP_5059 at 5765.606 kb on + strand, within PP_5059 at 5765.606 kb on + strand, within PP_5059 at 5765.606 kb on + strand, within PP_5059 at 5765.847 kb on + strand, within PP_5059 at 5765.847 kb on + strand, within PP_5059 at 5765.848 kb on - strand, within PP_5059 at 5765.859 kb on + strand, within PP_5059 at 5765.860 kb on - strand, within PP_5059 at 5765.860 kb on - strand, within PP_5059 at 5765.915 kb on - strand, within PP_5059 at 5765.915 kb on - strand, within PP_5059 at 5766.085 kb on + strand at 5766.085 kb on + strand at 5766.193 kb on + strand at 5766.212 kb on - strand at 5766.222 kb on + strand at 5766.222 kb on + strand at 5766.223 kb on - strand at 5766.223 kb on - strand at 5766.403 kb on + strand at 5766.416 kb on - strand at 5766.416 kb on - strand at 5766.448 kb on + strand at 5766.449 kb on - strand at 5766.449 kb on - strand at 5766.520 kb on + strand at 5766.678 kb on - strand, within PP_5060 at 5766.678 kb on - strand, within PP_5060 at 5766.823 kb on - strand, within PP_5060 at 5766.823 kb on - strand, within PP_5060 at 5766.823 kb on - strand, within PP_5060 at 5766.939 kb on + strand, within PP_5060 at 5766.940 kb on - strand, within PP_5060 at 5766.940 kb on - strand, within PP_5060 at 5766.986 kb on - strand, within PP_5060 at 5766.986 kb on - strand, within PP_5060 at 5767.060 kb on - strand, within PP_5060 at 5767.090 kb on + strand, within PP_5060 at 5767.090 kb on + strand, within PP_5060 at 5767.090 kb on + strand, within PP_5060 at 5767.091 kb on - strand, within PP_5060 at 5767.091 kb on - strand, within PP_5060 at 5767.091 kb on - strand, within PP_5060
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 5,764,363 + PP_5058 0.26 -0.9 5,764,363 + PP_5058 0.26 +1.0 5,764,363 + PP_5058 0.26 +1.3 5,764,391 - PP_5058 0.28 -0.3 5,764,625 - PP_5058 0.46 +2.0 5,764,638 + PP_5058 0.47 -0.2 5,764,644 + PP_5058 0.47 +0.3 5,764,645 - PP_5058 0.47 +1.2 5,764,912 + PP_5058 0.68 +1.0 5,765,076 + PP_5058 0.80 +0.8 5,765,079 + PP_5058 0.80 +1.0 5,765,079 + PP_5058 0.80 +1.3 5,765,079 + PP_5058 0.80 -0.7 5,765,079 + PP_5058 0.80 -1.2 5,765,080 - PP_5058 0.80 +3.0 5,765,080 - PP_5058 0.80 -0.8 5,765,080 - PP_5058 0.80 +0.5 5,765,344 + -0.6 5,765,344 + +0.5 5,765,344 + -0.1 5,765,345 - +0.4 5,765,345 - +0.6 5,765,345 - +1.0 5,765,351 + -1.4 5,765,352 - +1.4 5,765,352 - -0.0 5,765,417 + +0.6 5,765,417 + -0.4 5,765,417 + +0.5 5,765,417 + -1.0 5,765,418 - +0.8 5,765,606 + PP_5059 0.34 -0.0 5,765,606 + PP_5059 0.34 -0.2 5,765,606 + PP_5059 0.34 +1.2 5,765,606 + PP_5059 0.34 +0.3 5,765,847 + PP_5059 0.65 +0.7 5,765,847 + PP_5059 0.65 +0.5 5,765,848 - PP_5059 0.65 +1.1 5,765,859 + PP_5059 0.67 +1.6 5,765,860 - PP_5059 0.67 +0.1 5,765,860 - PP_5059 0.67 -1.0 5,765,915 - PP_5059 0.74 +0.2 5,765,915 - PP_5059 0.74 +0.9 5,766,085 + +1.2 5,766,085 + +0.7 5,766,193 + -2.5 5,766,212 - -0.4 5,766,222 + +0.1 5,766,222 + +0.2 5,766,223 - -0.1 5,766,223 - -0.4 5,766,403 + +0.1 5,766,416 - +0.4 5,766,416 - -0.2 5,766,448 + +0.4 5,766,449 - +0.0 5,766,449 - -0.5 5,766,520 + +0.7 5,766,678 - PP_5060 0.11 +0.0 5,766,678 - PP_5060 0.11 -0.3 5,766,823 - PP_5060 0.14 -1.0 5,766,823 - PP_5060 0.14 -0.2 5,766,823 - PP_5060 0.14 -0.3 5,766,939 + PP_5060 0.17 +0.4 5,766,940 - PP_5060 0.17 -0.3 5,766,940 - PP_5060 0.17 +1.0 5,766,986 - PP_5060 0.18 -0.3 5,766,986 - PP_5060 0.18 +1.3 5,767,060 - PP_5060 0.19 -0.3 5,767,090 + PP_5060 0.20 -0.5 5,767,090 + PP_5060 0.20 -0.1 5,767,090 + PP_5060 0.20 -0.1 5,767,091 - PP_5060 0.20 +0.3 5,767,091 - PP_5060 0.20 +0.0 5,767,091 - PP_5060 0.20 -0.3
Or see this region's nucleotide sequence