Strain Fitness in Pseudomonas putida KT2440 around PP_4545

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4544 and PP_4545 are separated by 200 nucleotidesPP_4545 and PP_4546 are separated by 123 nucleotides PP_4544: PP_4544 - conserved exported protein of unknown function, at 5,161,233 to 5,162,477 _4544 PP_4545: PP_4545 - beta-ketodecanoyl-(Acyl-carrier-protein) synthase, at 5,162,678 to 5,163,850 _4545 PP_4546: PP_4546 - ATP-dependent helicase HrpA, at 5,163,974 to 5,167,879 _4546 Position (kb) 5162 5163 5164Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5161.683 kb on + strand, within PP_4544at 5161.683 kb on + strand, within PP_4544at 5161.683 kb on + strand, within PP_4544at 5161.684 kb on - strand, within PP_4544at 5161.684 kb on - strand, within PP_4544at 5161.684 kb on - strand, within PP_4544at 5161.719 kb on + strand, within PP_4544at 5161.719 kb on + strand, within PP_4544at 5161.848 kb on + strand, within PP_4544at 5161.848 kb on + strand, within PP_4544at 5161.848 kb on + strand, within PP_4544at 5161.848 kb on + strand, within PP_4544at 5161.849 kb on - strand, within PP_4544at 5161.849 kb on - strand, within PP_4544at 5161.849 kb on - strand, within PP_4544at 5161.896 kb on + strand, within PP_4544at 5161.897 kb on - strand, within PP_4544at 5161.897 kb on - strand, within PP_4544at 5161.935 kb on + strand, within PP_4544at 5161.936 kb on - strand, within PP_4544at 5161.936 kb on - strand, within PP_4544at 5161.957 kb on - strand, within PP_4544at 5161.957 kb on - strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.025 kb on + strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.026 kb on - strand, within PP_4544at 5162.151 kb on + strand, within PP_4544at 5162.160 kb on + strand, within PP_4544at 5162.160 kb on + strandat 5162.161 kb on - strand, within PP_4544at 5162.247 kb on + strand, within PP_4544at 5162.247 kb on + strand, within PP_4544at 5162.317 kb on - strand, within PP_4544at 5162.352 kb on + strand, within PP_4544at 5162.476 kb on - strandat 5162.597 kb on - strandat 5162.625 kb on + strandat 5162.625 kb on + strandat 5162.626 kb on - strandat 5162.701 kb on + strandat 5162.701 kb on + strandat 5162.701 kb on + strandat 5162.769 kb on + strandat 5162.770 kb on - strandat 5162.806 kb on + strand, within PP_4545at 5162.807 kb on - strand, within PP_4545at 5163.020 kb on + strand, within PP_4545at 5163.020 kb on + strand, within PP_4545at 5163.021 kb on - strand, within PP_4545at 5163.021 kb on - strand, within PP_4545at 5163.021 kb on - strand, within PP_4545at 5163.291 kb on - strand, within PP_4545at 5163.295 kb on + strand, within PP_4545at 5163.296 kb on - strand, within PP_4545at 5163.766 kb on - strandat 5163.766 kb on - strandat 5163.766 kb on - strandat 5163.766 kb on - strandat 5163.766 kb on - strandat 5163.794 kb on - strandat 5163.859 kb on - strandat 5163.870 kb on - strandat 5163.888 kb on + strandat 5163.888 kb on + strandat 5163.888 kb on + strandat 5163.888 kb on + strandat 5163.889 kb on - strandat 5163.889 kb on - strandat 5163.889 kb on - strandat 5163.889 kb on - strandat 5163.889 kb on - strandat 5163.889 kb on - strandat 5163.889 kb on - strandat 5163.889 kb on - strandat 5163.965 kb on + strandat 5163.965 kb on + strandat 5163.966 kb on - strandat 5163.966 kb on - strandat 5164.147 kb on - strandat 5164.196 kb on + strandat 5164.297 kb on - strandat 5164.297 kb on - strandat 5164.310 kb on + strandat 5164.565 kb on + strand, within PP_4546

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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5,161,683 + PP_4544 0.36 +0.6
5,161,683 + PP_4544 0.36 +0.5
5,161,683 + PP_4544 0.36 +0.4
5,161,684 - PP_4544 0.36 -3.3
5,161,684 - PP_4544 0.36 +0.0
5,161,684 - PP_4544 0.36 +0.9
5,161,719 + PP_4544 0.39 +0.1
5,161,719 + PP_4544 0.39 -0.4
5,161,848 + PP_4544 0.49 +0.1
5,161,848 + PP_4544 0.49 -2.4
5,161,848 + PP_4544 0.49 -0.9
5,161,848 + PP_4544 0.49 +0.5
5,161,849 - PP_4544 0.49 -0.3
5,161,849 - PP_4544 0.49 -0.4
5,161,849 - PP_4544 0.49 -0.5
5,161,896 + PP_4544 0.53 +0.3
5,161,897 - PP_4544 0.53 +0.2
5,161,897 - PP_4544 0.53 +0.6
5,161,935 + PP_4544 0.56 -0.6
5,161,936 - PP_4544 0.56 +0.1
5,161,936 - PP_4544 0.56 -0.1
5,161,957 - PP_4544 0.58 +0.5
5,161,957 - PP_4544 0.58 -0.3
5,162,025 + PP_4544 0.64 +0.5
5,162,025 + PP_4544 0.64 +0.1
5,162,025 + PP_4544 0.64 -0.3
5,162,025 + PP_4544 0.64 -0.8
5,162,025 + PP_4544 0.64 +0.8
5,162,025 + PP_4544 0.64 -0.3
5,162,025 + PP_4544 0.64 +0.2
5,162,026 - PP_4544 0.64 +0.3
5,162,026 - PP_4544 0.64 +0.0
5,162,026 - PP_4544 0.64 +1.8
5,162,026 - PP_4544 0.64 +0.2
5,162,026 - PP_4544 0.64 +0.2
5,162,026 - PP_4544 0.64 -0.8
5,162,026 - PP_4544 0.64 -0.7
5,162,026 - PP_4544 0.64 +0.6
5,162,026 - PP_4544 0.64 +1.2
5,162,151 + PP_4544 0.74 +0.1
5,162,160 + PP_4544 0.74 -0.0
5,162,160 + +2.0
5,162,161 - PP_4544 0.75 -0.4
5,162,247 + PP_4544 0.81 +0.5
5,162,247 + PP_4544 0.81 +1.1
5,162,317 - PP_4544 0.87 +0.5
5,162,352 + PP_4544 0.90 -0.5
5,162,476 - -0.5
5,162,597 - +0.0
5,162,625 + +0.8
5,162,625 + +0.7
5,162,626 - -0.1
5,162,701 + -0.0
5,162,701 + +0.1
5,162,701 + +0.0
5,162,769 + +0.5
5,162,770 - -0.1
5,162,806 + PP_4545 0.11 +0.1
5,162,807 - PP_4545 0.11 -1.3
5,163,020 + PP_4545 0.29 +0.5
5,163,020 + PP_4545 0.29 +0.7
5,163,021 - PP_4545 0.29 +0.8
5,163,021 - PP_4545 0.29 +1.3
5,163,021 - PP_4545 0.29 -0.7
5,163,291 - PP_4545 0.52 +0.7
5,163,295 + PP_4545 0.53 +1.0
5,163,296 - PP_4545 0.53 -0.3
5,163,766 - -1.3
5,163,766 - -0.3
5,163,766 - +0.7
5,163,766 - +0.9
5,163,766 - +0.8
5,163,794 - +0.7
5,163,859 - +0.4
5,163,870 - +0.1
5,163,888 + +0.3
5,163,888 + -0.1
5,163,888 + -2.0
5,163,888 + +0.6
5,163,889 - -0.8
5,163,889 - +0.0
5,163,889 - +0.5
5,163,889 - -0.2
5,163,889 - +0.5
5,163,889 - +0.7
5,163,889 - -0.5
5,163,889 - +0.9
5,163,965 + +0.2
5,163,965 + -0.3
5,163,966 - +0.0
5,163,966 - +0.2
5,164,147 - +0.4
5,164,196 + -1.4
5,164,297 - +0.4
5,164,297 - +0.4
5,164,310 + -0.6
5,164,565 + PP_4546 0.15 +2.5

Or see this region's nucleotide sequence