Strain Fitness in Pseudomonas putida KT2440 around PP_0804

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0803 and PP_0804 overlap by 4 nucleotidesPP_0804 and PP_0805 overlap by 4 nucleotides PP_0803: PP_0803 - Protein secretion ABC efflux system, membrane fusion protein, at 921,843 to 923,027 _0803 PP_0804: PP_0804 - Protein secretion ABC efflux system, permease and ATP-binding protein, at 923,024 to 925,192 _0804 PP_0805: PP_0805 - Outer membrane efflux protein, at 925,189 to 926,625 _0805 Position (kb) 923 924 925 926Strain fitness (log2 ratio) -1 0 1 2at 922.068 kb on + strand, within PP_0803at 922.093 kb on + strand, within PP_0803at 922.094 kb on - strand, within PP_0803at 922.094 kb on - strand, within PP_0803at 922.096 kb on - strand, within PP_0803at 922.096 kb on - strand, within PP_0803at 922.103 kb on - strand, within PP_0803at 922.103 kb on - strand, within PP_0803at 922.108 kb on + strand, within PP_0803at 922.108 kb on + strand, within PP_0803at 922.109 kb on - strand, within PP_0803at 922.400 kb on - strand, within PP_0803at 922.588 kb on + strand, within PP_0803at 922.588 kb on + strand, within PP_0803at 922.589 kb on - strand, within PP_0803at 922.589 kb on - strand, within PP_0803at 922.706 kb on - strand, within PP_0803at 922.999 kb on + strandat 923.000 kb on - strandat 923.158 kb on + strandat 923.682 kb on + strand, within PP_0804at 923.683 kb on - strand, within PP_0804at 924.054 kb on + strand, within PP_0804at 924.054 kb on + strand, within PP_0804at 924.055 kb on - strand, within PP_0804at 924.552 kb on + strand, within PP_0804at 924.553 kb on - strand, within PP_0804at 924.553 kb on - strand, within PP_0804at 924.591 kb on + strand, within PP_0804at 924.591 kb on + strand, within PP_0804at 924.686 kb on + strand, within PP_0804at 924.687 kb on - strand, within PP_0804at 924.726 kb on + strand, within PP_0804at 924.727 kb on - strand, within PP_0804at 924.788 kb on - strand, within PP_0804at 925.049 kb on - strandat 925.061 kb on + strandat 925.061 kb on + strandat 925.262 kb on + strandat 925.262 kb on + strandat 925.262 kb on + strandat 925.263 kb on - strandat 925.328 kb on + strandat 925.328 kb on + strandat 925.375 kb on + strand, within PP_0805at 925.376 kb on - strand, within PP_0805at 925.386 kb on - strand, within PP_0805at 925.386 kb on - strand, within PP_0805at 925.592 kb on + strand, within PP_0805at 925.592 kb on + strandat 925.593 kb on - strand, within PP_0805at 925.593 kb on - strand, within PP_0805at 925.593 kb on - strand, within PP_0805at 925.593 kb on - strand, within PP_0805at 925.616 kb on + strand, within PP_0805at 925.661 kb on + strand, within PP_0805at 925.662 kb on - strand, within PP_0805at 925.677 kb on - strand, within PP_0805at 925.707 kb on + strand, within PP_0805at 925.712 kb on + strand, within PP_0805at 925.713 kb on - strand, within PP_0805at 925.910 kb on + strand, within PP_0805at 925.923 kb on - strand, within PP_0805at 925.969 kb on + strand, within PP_0805at 925.970 kb on - strand, within PP_0805at 926.102 kb on + strand, within PP_0805at 926.102 kb on + strand, within PP_0805at 926.103 kb on - strand, within PP_0805at 926.103 kb on - strand, within PP_0805

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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922,068 + PP_0803 0.19 +0.9
922,093 + PP_0803 0.21 +0.2
922,094 - PP_0803 0.21 +0.3
922,094 - PP_0803 0.21 +0.3
922,096 - PP_0803 0.21 +0.8
922,096 - PP_0803 0.21 +0.9
922,103 - PP_0803 0.22 +0.6
922,103 - PP_0803 0.22 +0.4
922,108 + PP_0803 0.22 +1.1
922,108 + PP_0803 0.22 +0.9
922,109 - PP_0803 0.22 +0.9
922,400 - PP_0803 0.47 +0.5
922,588 + PP_0803 0.63 +0.6
922,588 + PP_0803 0.63 +1.4
922,589 - PP_0803 0.63 +0.2
922,589 - PP_0803 0.63 +1.2
922,706 - PP_0803 0.73 +1.7
922,999 + +0.3
923,000 - +0.6
923,158 + +0.4
923,682 + PP_0804 0.30 +0.5
923,683 - PP_0804 0.30 -0.2
924,054 + PP_0804 0.47 +0.5
924,054 + PP_0804 0.47 +0.9
924,055 - PP_0804 0.48 +0.1
924,552 + PP_0804 0.70 +0.7
924,553 - PP_0804 0.70 +0.0
924,553 - PP_0804 0.70 +0.0
924,591 + PP_0804 0.72 +0.6
924,591 + PP_0804 0.72 +0.2
924,686 + PP_0804 0.77 +0.3
924,687 - PP_0804 0.77 +0.4
924,726 + PP_0804 0.78 +0.4
924,727 - PP_0804 0.79 +0.5
924,788 - PP_0804 0.81 +0.3
925,049 - +0.8
925,061 + +1.2
925,061 + +0.4
925,262 + +1.1
925,262 + -0.6
925,262 + +0.5
925,263 - -0.2
925,328 + +1.3
925,328 + +0.1
925,375 + PP_0805 0.13 +0.4
925,376 - PP_0805 0.13 +0.9
925,386 - PP_0805 0.14 +0.2
925,386 - PP_0805 0.14 +1.0
925,592 + PP_0805 0.28 +0.8
925,592 + +1.8
925,593 - PP_0805 0.28 +0.1
925,593 - PP_0805 0.28 +0.3
925,593 - PP_0805 0.28 +0.0
925,593 - PP_0805 0.28 -0.0
925,616 + PP_0805 0.30 +1.1
925,661 + PP_0805 0.33 -0.2
925,662 - PP_0805 0.33 +0.9
925,677 - PP_0805 0.34 +0.6
925,707 + PP_0805 0.36 +0.4
925,712 + PP_0805 0.36 +1.5
925,713 - PP_0805 0.36 +1.0
925,910 + PP_0805 0.50 +0.7
925,923 - PP_0805 0.51 +1.6
925,969 + PP_0805 0.54 +0.9
925,970 - PP_0805 0.54 +0.8
926,102 + PP_0805 0.64 -0.2
926,102 + PP_0805 0.64 +0.5
926,103 - PP_0805 0.64 +1.3
926,103 - PP_0805 0.64 +0.4

Or see this region's nucleotide sequence