Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0742 and PP_0743 are separated by 186 nucleotides PP_0743 and PP_0744 are separated by 13 nucleotides
PP_0742: PP_0742 - conserved exported protein of unknown function, at 860,775 to 861,761
_0742
PP_0743: PP_0743 - conserved protein with NAD(P)-binding Rossmann-fold domain, at 861,948 to 862,853
_0743
PP_0744: PP_0744 - Ferrochelatase, at 862,867 to 863,883
_0744
Position (kb) 861
862
863 Strain fitness (log2 ratio) -1
0
1
2 at 861.170 kb on + strand, within PP_0742 at 861.209 kb on + strand, within PP_0742 at 861.210 kb on - strand, within PP_0742 at 861.210 kb on - strand, within PP_0742 at 861.310 kb on + strand, within PP_0742 at 861.353 kb on - strand, within PP_0742 at 861.482 kb on + strand, within PP_0742 at 861.482 kb on + strand, within PP_0742 at 861.482 kb on + strand, within PP_0742 at 861.482 kb on + strand, within PP_0742 at 861.482 kb on + strand, within PP_0742 at 861.482 kb on + strand, within PP_0742 at 861.483 kb on - strand, within PP_0742 at 861.483 kb on - strand, within PP_0742 at 861.500 kb on - strand, within PP_0742 at 861.500 kb on - strand, within PP_0742 at 861.505 kb on + strand, within PP_0742 at 861.505 kb on + strand, within PP_0742 at 861.506 kb on - strand, within PP_0742 at 861.506 kb on - strand, within PP_0742 at 861.506 kb on - strand, within PP_0742 at 861.506 kb on - strand, within PP_0742 at 861.506 kb on - strand, within PP_0742 at 861.506 kb on - strand, within PP_0742 at 861.592 kb on + strand, within PP_0742 at 861.593 kb on - strand, within PP_0742 at 861.750 kb on - strand at 861.753 kb on + strand at 861.753 kb on + strand at 861.754 kb on - strand at 861.754 kb on - strand at 861.754 kb on - strand at 861.794 kb on + strand at 861.795 kb on - strand at 861.795 kb on - strand at 861.795 kb on - strand at 861.814 kb on + strand at 861.815 kb on - strand at 861.829 kb on - strand at 861.834 kb on + strand at 861.834 kb on + strand at 861.834 kb on + strand at 861.835 kb on - strand at 861.835 kb on - strand at 861.835 kb on - strand at 861.866 kb on + strand at 861.866 kb on + strand at 861.867 kb on - strand at 861.867 kb on - strand at 861.909 kb on + strand at 861.916 kb on - strand at 861.953 kb on + strand at 861.953 kb on + strand at 861.953 kb on + strand at 861.953 kb on + strand at 861.953 kb on + strand at 861.953 kb on + strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.955 kb on + strand at 861.955 kb on + strand at 861.955 kb on + strand at 861.955 kb on + strand at 861.955 kb on + strand at 861.955 kb on + strand at 861.955 kb on + strand at 861.955 kb on + strand at 861.955 kb on + strand at 861.956 kb on - strand at 861.956 kb on - strand at 861.956 kb on - strand at 861.956 kb on - strand at 861.956 kb on - strand at 862.108 kb on + strand, within PP_0743 at 862.108 kb on + strand, within PP_0743 at 862.109 kb on - strand, within PP_0743 at 862.109 kb on - strand at 862.109 kb on - strand, within PP_0743 at 862.300 kb on - strand, within PP_0743 at 862.373 kb on + strand, within PP_0743 at 862.374 kb on - strand, within PP_0743 at 862.417 kb on + strand, within PP_0743 at 862.417 kb on + strand, within PP_0743 at 862.418 kb on - strand, within PP_0743 at 862.426 kb on + strand, within PP_0743 at 862.427 kb on - strand, within PP_0743 at 862.427 kb on - strand, within PP_0743 at 862.550 kb on + strand, within PP_0743 at 862.551 kb on - strand, within PP_0743 at 862.551 kb on - strand, within PP_0743 at 862.552 kb on + strand, within PP_0743 at 862.553 kb on - strand, within PP_0743 at 862.553 kb on - strand, within PP_0743 at 862.611 kb on + strand, within PP_0743 at 862.612 kb on - strand, within PP_0743 at 862.612 kb on - strand, within PP_0743 at 862.612 kb on - strand, within PP_0743 at 862.612 kb on - strand, within PP_0743 at 862.612 kb on - strand, within PP_0743 at 862.613 kb on + strand, within PP_0743 at 862.613 kb on + strand, within PP_0743
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 861,170 + PP_0742 0.40 -0.6 861,209 + PP_0742 0.44 +0.8 861,210 - PP_0742 0.44 -0.4 861,210 - PP_0742 0.44 +1.0 861,310 + PP_0742 0.54 +0.2 861,353 - PP_0742 0.59 +0.6 861,482 + PP_0742 0.72 -0.9 861,482 + PP_0742 0.72 +0.4 861,482 + PP_0742 0.72 +0.7 861,482 + PP_0742 0.72 -0.6 861,482 + PP_0742 0.72 -1.3 861,482 + PP_0742 0.72 -0.8 861,483 - PP_0742 0.72 -0.4 861,483 - PP_0742 0.72 -0.4 861,500 - PP_0742 0.73 -0.1 861,500 - PP_0742 0.73 -0.4 861,505 + PP_0742 0.74 +0.2 861,505 + PP_0742 0.74 -0.6 861,506 - PP_0742 0.74 +0.3 861,506 - PP_0742 0.74 +0.1 861,506 - PP_0742 0.74 +0.6 861,506 - PP_0742 0.74 -0.8 861,506 - PP_0742 0.74 +0.8 861,506 - PP_0742 0.74 +0.8 861,592 + PP_0742 0.83 -0.3 861,593 - PP_0742 0.83 +0.2 861,750 - +0.5 861,753 + -0.6 861,753 + -1.4 861,754 - +0.6 861,754 - +0.1 861,754 - +0.3 861,794 + -1.1 861,795 - +0.8 861,795 - -0.4 861,795 - +0.1 861,814 + -1.5 861,815 - -0.0 861,829 - +1.1 861,834 + +0.0 861,834 + -0.2 861,834 + -0.7 861,835 - -0.9 861,835 - -0.5 861,835 - +1.1 861,866 + +0.2 861,866 + +0.6 861,867 - -0.3 861,867 - +0.3 861,909 + -0.6 861,916 - -0.0 861,953 + +0.5 861,953 + +0.4 861,953 + +0.3 861,953 + -1.5 861,953 + -0.2 861,953 + +0.9 861,954 - +0.7 861,954 - +0.6 861,954 - +0.4 861,954 - +0.6 861,954 - +0.3 861,954 - +0.4 861,954 - +0.9 861,954 - +0.4 861,954 - -0.4 861,954 - +1.1 861,954 - -0.2 861,954 - +0.5 861,954 - +0.4 861,955 + +0.3 861,955 + -0.2 861,955 + +0.2 861,955 + -1.0 861,955 + +1.1 861,955 + -0.2 861,955 + -0.7 861,955 + +1.1 861,955 + +1.0 861,956 - +0.2 861,956 - -0.2 861,956 - +1.2 861,956 - -0.6 861,956 - -0.2 862,108 + PP_0743 0.18 +1.3 862,108 + PP_0743 0.18 +0.5 862,109 - PP_0743 0.18 +0.2 862,109 - +0.5 862,109 - PP_0743 0.18 +0.2 862,300 - PP_0743 0.39 -0.3 862,373 + PP_0743 0.47 +0.9 862,374 - PP_0743 0.47 -0.0 862,417 + PP_0743 0.52 +1.6 862,417 + PP_0743 0.52 +0.0 862,418 - PP_0743 0.52 -0.5 862,426 + PP_0743 0.53 -0.2 862,427 - PP_0743 0.53 +0.6 862,427 - PP_0743 0.53 +0.7 862,550 + PP_0743 0.66 +1.1 862,551 - PP_0743 0.67 +0.5 862,551 - PP_0743 0.67 +1.6 862,552 + PP_0743 0.67 +0.7 862,553 - PP_0743 0.67 +0.3 862,553 - PP_0743 0.67 +0.3 862,611 + PP_0743 0.73 +0.2 862,612 - PP_0743 0.73 -0.4 862,612 - PP_0743 0.73 +2.4 862,612 - PP_0743 0.73 +0.5 862,612 - PP_0743 0.73 +0.9 862,612 - PP_0743 0.73 +0.1 862,613 + PP_0743 0.73 +0.9 862,613 + PP_0743 0.73 -0.1
Or see this region's nucleotide sequence