Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0229 and PP_0230 are separated by 62 nucleotides PP_0230 and PP_0231 are separated by 48 nucleotides PP_0231 and PP_0232 overlap by 4 nucleotides PP_0232 and PP_0233 are separated by 13 nucleotides
PP_0229: PP_0229 - choline/carnitine/betaine transporter, at 282,550 to 284,553
_0229
PP_0230: PP_0230 - alpha-ketoglutarate-dependent sulfonate dioxygenase, at 284,616 to 285,449
_0230
PP_0231: PP_0231 - taurine ABC transporter permease subunit, at 285,498 to 286,337
_0231
PP_0232: PP_0232 - ATP-binding taurine transporter subunit, at 286,334 to 287,122
_0232
PP_0233: PP_0233 - taurine ABC transporter periplasmic binding subunit, at 287,136 to 288,107
_0233
Position (kb) 285
286
287 Strain fitness (log2 ratio) -2
-1
0
1
2 at 284.533 kb on + strand at 284.533 kb on + strand at 284.533 kb on + strand at 285.092 kb on - strand, within PP_0230 at 285.377 kb on + strand at 285.823 kb on - strand, within PP_0231 at 285.877 kb on + strand, within PP_0231 at 285.878 kb on - strand, within PP_0231 at 285.878 kb on - strand, within PP_0231 at 286.007 kb on - strand, within PP_0231 at 286.114 kb on + strand, within PP_0231 at 286.114 kb on + strand, within PP_0231 at 286.114 kb on + strand, within PP_0231 at 286.114 kb on + strand, within PP_0231 at 286.114 kb on + strand, within PP_0231 at 286.114 kb on + strand, within PP_0231 at 286.115 kb on - strand, within PP_0231 at 286.218 kb on + strand, within PP_0231 at 286.512 kb on - strand, within PP_0232 at 287.085 kb on + strand at 287.164 kb on + strand at 287.164 kb on + strand at 287.164 kb on + strand at 287.165 kb on - strand at 287.165 kb on - strand at 287.288 kb on - strand, within PP_0233
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 284,533 + -0.2 284,533 + +0.8 284,533 + +2.0 285,092 - PP_0230 0.57 +0.7 285,377 + +0.6 285,823 - PP_0231 0.39 +0.6 285,877 + PP_0231 0.45 -0.4 285,878 - PP_0231 0.45 +0.5 285,878 - PP_0231 0.45 +0.5 286,007 - PP_0231 0.61 -0.1 286,114 + PP_0231 0.73 +0.4 286,114 + PP_0231 0.73 +0.9 286,114 + PP_0231 0.73 +1.0 286,114 + PP_0231 0.73 +1.1 286,114 + PP_0231 0.73 -2.7 286,114 + PP_0231 0.73 +0.4 286,115 - PP_0231 0.73 +0.6 286,218 + PP_0231 0.86 +1.0 286,512 - PP_0232 0.23 +0.0 287,085 + -0.5 287,164 + -1.2 287,164 + +0.2 287,164 + -0.3 287,165 - +1.0 287,165 - -1.1 287,288 - PP_0233 0.16 +0.0
Or see this region's nucleotide sequence