Strain Fitness in Agrobacterium fabrum C58 around Atu5176

Experiment: LB_Lettuce_Leaf

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu8203 and Atu5175 are separated by 207 nucleotidesAtu5175 and Atu5176 are separated by 1 nucleotidesAtu5176 and Atu5177 are separated by 246 nucleotides Atu8203: Atu8203 - hypothetical protein, at 171,061 to 171,345 Atu8203 Atu5175: Atu5175 - two component response regulator, at 171,553 to 172,227 Atu5175 Atu5176: Atu5176 - two component sensor kinase, at 172,229 to 173,578 Atu5176 Atu5177: Atu5177 - efflux protein, at 173,825 to 175,018 Atu5177 Position (kb) 172 173 174Strain fitness (log2 ratio) -2 -1 0 1 2at 171.240 kb on - strand, within Atu8203at 171.240 kb on - strand, within Atu8203at 171.291 kb on + strand, within Atu8203at 171.321 kb on + strandat 171.371 kb on - strandat 171.376 kb on - strandat 171.385 kb on + strandat 171.417 kb on - strandat 171.602 kb on + strandat 171.602 kb on + strandat 171.608 kb on + strandat 171.609 kb on - strandat 171.623 kb on + strand, within Atu5175at 171.628 kb on + strand, within Atu5175at 171.726 kb on + strand, within Atu5175at 171.734 kb on - strand, within Atu5175at 171.745 kb on + strand, within Atu5175at 171.753 kb on - strand, within Atu5175at 171.833 kb on - strand, within Atu5175at 171.838 kb on + strand, within Atu5175at 171.841 kb on - strand, within Atu5175at 171.895 kb on + strand, within Atu5175at 171.903 kb on - strand, within Atu5175at 171.914 kb on + strand, within Atu5175at 171.914 kb on + strand, within Atu5175at 171.979 kb on - strand, within Atu5175at 172.015 kb on + strand, within Atu5175at 172.017 kb on + strand, within Atu5175at 172.057 kb on + strand, within Atu5175at 172.067 kb on + strand, within Atu5175at 172.084 kb on + strand, within Atu5175at 172.091 kb on - strand, within Atu5175at 172.231 kb on + strandat 172.277 kb on + strandat 172.282 kb on + strandat 172.285 kb on - strandat 172.306 kb on - strandat 172.308 kb on + strandat 172.403 kb on - strand, within Atu5176at 172.419 kb on + strand, within Atu5176at 172.509 kb on - strand, within Atu5176at 172.569 kb on - strand, within Atu5176at 172.569 kb on - strand, within Atu5176at 172.569 kb on - strand, within Atu5176at 172.603 kb on - strand, within Atu5176at 172.694 kb on - strand, within Atu5176at 172.694 kb on - strand, within Atu5176at 172.766 kb on + strand, within Atu5176at 172.835 kb on + strand, within Atu5176at 172.862 kb on + strand, within Atu5176at 172.994 kb on - strand, within Atu5176at 172.999 kb on + strand, within Atu5176at 172.999 kb on - strand, within Atu5176at 173.025 kb on + strand, within Atu5176at 173.033 kb on - strand, within Atu5176at 173.033 kb on - strand, within Atu5176at 173.033 kb on - strand, within Atu5176at 173.042 kb on - strand, within Atu5176at 173.092 kb on - strand, within Atu5176at 173.143 kb on - strand, within Atu5176at 173.294 kb on + strand, within Atu5176at 173.306 kb on + strand, within Atu5176at 173.330 kb on - strand, within Atu5176at 173.411 kb on - strand, within Atu5176at 173.419 kb on - strand, within Atu5176at 173.436 kb on + strand, within Atu5176at 173.442 kb on - strand, within Atu5176at 173.444 kb on - strandat 173.458 kb on + strandat 173.458 kb on + strandat 173.463 kb on - strandat 173.508 kb on + strandat 173.547 kb on + strandat 173.574 kb on + strandat 173.872 kb on + strandat 174.115 kb on + strand, within Atu5177at 174.123 kb on - strand, within Atu5177at 174.123 kb on - strand, within Atu5177at 174.148 kb on + strand, within Atu5177at 174.154 kb on + strand, within Atu5177at 174.154 kb on + strand, within Atu5177at 174.162 kb on - strand, within Atu5177at 174.190 kb on + strand, within Atu5177at 174.205 kb on - strand, within Atu5177at 174.248 kb on - strand, within Atu5177at 174.249 kb on + strand, within Atu5177at 174.278 kb on + strand, within Atu5177at 174.288 kb on - strand, within Atu5177at 174.309 kb on - strand, within Atu5177at 174.331 kb on + strand, within Atu5177at 174.348 kb on + strand, within Atu5177at 174.362 kb on + strand, within Atu5177at 174.362 kb on + strand, within Atu5177at 174.374 kb on + strand, within Atu5177at 174.445 kb on + strand, within Atu5177at 174.451 kb on - strand, within Atu5177at 174.489 kb on + strand, within Atu5177at 174.497 kb on - strand, within Atu5177

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Lettuce_Leaf
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171,240 - Atu8203 0.63 -0.4
171,240 - Atu8203 0.63 +0.4
171,291 + Atu8203 0.81 +0.0
171,321 + +0.2
171,371 - +0.0
171,376 - -0.1
171,385 + -0.2
171,417 - +0.1
171,602 + -0.2
171,602 + +0.3
171,608 + +0.5
171,609 - -1.8
171,623 + Atu5175 0.10 +0.1
171,628 + Atu5175 0.11 -1.0
171,726 + Atu5175 0.26 +0.5
171,734 - Atu5175 0.27 +0.9
171,745 + Atu5175 0.28 -0.2
171,753 - Atu5175 0.30 -0.3
171,833 - Atu5175 0.41 -0.6
171,838 + Atu5175 0.42 +0.2
171,841 - Atu5175 0.43 -0.3
171,895 + Atu5175 0.51 +0.1
171,903 - Atu5175 0.52 -0.6
171,914 + Atu5175 0.53 -1.1
171,914 + Atu5175 0.53 +0.4
171,979 - Atu5175 0.63 +0.9
172,015 + Atu5175 0.68 +0.1
172,017 + Atu5175 0.69 -0.4
172,057 + Atu5175 0.75 -0.4
172,067 + Atu5175 0.76 -0.0
172,084 + Atu5175 0.79 -0.9
172,091 - Atu5175 0.80 -0.9
172,231 + +0.9
172,277 + -0.2
172,282 + -1.2
172,285 - -0.1
172,306 - +0.3
172,308 + +0.4
172,403 - Atu5176 0.13 -0.1
172,419 + Atu5176 0.14 +0.4
172,509 - Atu5176 0.21 -0.3
172,569 - Atu5176 0.25 +0.2
172,569 - Atu5176 0.25 +0.1
172,569 - Atu5176 0.25 +0.0
172,603 - Atu5176 0.28 +0.1
172,694 - Atu5176 0.34 +0.5
172,694 - Atu5176 0.34 -0.1
172,766 + Atu5176 0.40 -0.1
172,835 + Atu5176 0.45 -0.4
172,862 + Atu5176 0.47 +0.1
172,994 - Atu5176 0.57 +0.1
172,999 + Atu5176 0.57 +0.0
172,999 - Atu5176 0.57 -0.2
173,025 + Atu5176 0.59 -0.0
173,033 - Atu5176 0.60 +0.9
173,033 - Atu5176 0.60 +0.1
173,033 - Atu5176 0.60 +0.4
173,042 - Atu5176 0.60 +0.9
173,092 - Atu5176 0.64 -0.1
173,143 - Atu5176 0.68 -0.1
173,294 + Atu5176 0.79 -0.1
173,306 + Atu5176 0.80 +0.5
173,330 - Atu5176 0.82 -0.9
173,411 - Atu5176 0.88 -0.0
173,419 - Atu5176 0.88 -0.0
173,436 + Atu5176 0.89 -0.2
173,442 - Atu5176 0.90 +0.1
173,444 - -0.0
173,458 + -0.2
173,458 + -0.4
173,463 - +0.2
173,508 + +0.0
173,547 + +0.1
173,574 + +1.1
173,872 + +0.2
174,115 + Atu5177 0.24 +1.4
174,123 - Atu5177 0.25 -0.3
174,123 - Atu5177 0.25 -0.3
174,148 + Atu5177 0.27 -0.7
174,154 + Atu5177 0.28 +0.7
174,154 + Atu5177 0.28 +0.1
174,162 - Atu5177 0.28 -0.3
174,190 + Atu5177 0.31 -0.3
174,205 - Atu5177 0.32 +0.1
174,248 - Atu5177 0.35 -0.2
174,249 + Atu5177 0.36 +0.1
174,278 + Atu5177 0.38 +0.2
174,288 - Atu5177 0.39 -0.5
174,309 - Atu5177 0.41 +0.1
174,331 + Atu5177 0.42 -0.2
174,348 + Atu5177 0.44 +0.9
174,362 + Atu5177 0.45 +2.6
174,362 + Atu5177 0.45 -0.0
174,374 + Atu5177 0.46 -0.1
174,445 + Atu5177 0.52 +0.2
174,451 - Atu5177 0.52 -0.3
174,489 + Atu5177 0.56 -1.1
174,497 - Atu5177 0.56 -1.5

Or see this region's nucleotide sequence