Experiment: LB_Lettuce_Leaf
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0081 and Atu0082 are separated by 135 nucleotides Atu0082 and Atu0084 are separated by 265 nucleotides Atu0084 and Atu0085 are separated by 165 nucleotides
Atu0081: Atu0081 - ribosomal RNA small subunit methyltransferase, at 83,313 to 84,329
Atu0081
Atu0082: Atu0082 - polyribonucleotide nucleotidyltransferase, at 84,465 to 86,606
Atu0082
Atu0084: Atu0084 - 30S ribosomal protein S15, at 86,872 to 87,141
Atu0084
Atu0085: Atu0085 - tRNA pseudouridine 55 synthase, at 87,307 to 88,254
Atu0085
Position (kb) 84
85
86
87 Strain fitness (log2 ratio) -1
0
1 at 83.477 kb on + strand, within Atu0081 at 83.478 kb on + strand, within Atu0081 at 83.486 kb on - strand, within Atu0081 at 83.486 kb on - strand, within Atu0081 at 83.652 kb on - strand, within Atu0081 at 83.715 kb on + strand, within Atu0081 at 83.723 kb on - strand, within Atu0081 at 83.780 kb on + strand, within Atu0081 at 83.825 kb on + strand, within Atu0081 at 83.864 kb on - strand, within Atu0081 at 83.968 kb on + strand, within Atu0081 at 83.976 kb on - strand, within Atu0081 at 84.081 kb on - strand, within Atu0081 at 84.090 kb on + strand, within Atu0081 at 84.126 kb on + strand, within Atu0081 at 84.133 kb on - strand, within Atu0081 at 84.139 kb on + strand, within Atu0081 at 84.147 kb on - strand, within Atu0081 at 84.158 kb on - strand, within Atu0081 at 84.462 kb on + strand at 87.339 kb on - strand at 87.365 kb on + strand at 87.382 kb on + strand at 87.437 kb on - strand, within Atu0085 at 87.442 kb on - strand, within Atu0085 at 87.452 kb on - strand, within Atu0085 at 87.465 kb on - strand, within Atu0085
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Lettuce_Leaf remove 83,477 + Atu0081 0.16 -1.2 83,478 + Atu0081 0.16 -0.2 83,486 - Atu0081 0.17 -0.8 83,486 - Atu0081 0.17 +0.2 83,652 - Atu0081 0.33 -0.4 83,715 + Atu0081 0.40 +0.0 83,723 - Atu0081 0.40 +0.1 83,780 + Atu0081 0.46 -1.1 83,825 + Atu0081 0.50 -0.2 83,864 - Atu0081 0.54 -0.0 83,968 + Atu0081 0.64 -0.3 83,976 - Atu0081 0.65 +0.1 84,081 - Atu0081 0.76 -1.7 84,090 + Atu0081 0.76 -0.6 84,126 + Atu0081 0.80 -0.0 84,133 - Atu0081 0.81 +0.4 84,139 + Atu0081 0.81 -0.3 84,147 - Atu0081 0.82 -0.0 84,158 - Atu0081 0.83 -0.0 84,462 + +1.3 87,339 - -0.4 87,365 + +0.8 87,382 + +0.4 87,437 - Atu0085 0.14 -0.5 87,442 - Atu0085 0.14 -0.4 87,452 - Atu0085 0.15 -0.4 87,465 - Atu0085 0.17 +0.8
Or see this region's nucleotide sequence